miRNA display CGI


Results 41 - 60 of 155 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11093 5' -56.3 NC_002794.1 + 112318 0.66 0.938489
Target:  5'- uCGGCGcCGaCGGCGGGGAGCgCGcCGGc -3'
miRNA:   3'- uGUCGUcGCaGUCGCUCCUUG-GU-GCC- -5'
11093 5' -56.3 NC_002794.1 + 92315 0.66 0.943048
Target:  5'- -gGGC-GCGggCGGCGGGGGcCCggGCGGg -3'
miRNA:   3'- ugUCGuCGCa-GUCGCUCCUuGG--UGCC- -5'
11093 5' -56.3 NC_002794.1 + 94217 0.66 0.938489
Target:  5'- gACGGUGGCGgcgacgGGCGGGcGGGCCggugACGGa -3'
miRNA:   3'- -UGUCGUCGCag----UCGCUC-CUUGG----UGCC- -5'
11093 5' -56.3 NC_002794.1 + 147622 0.66 0.943048
Target:  5'- -uGGCAGgCGUCGGaGAGGGuCCGCu- -3'
miRNA:   3'- ugUCGUC-GCAGUCgCUCCUuGGUGcc -5'
11093 5' -56.3 NC_002794.1 + 121528 0.66 0.943048
Target:  5'- cCGGCGGuCGUCu-CGAcGGAGCC-CGGu -3'
miRNA:   3'- uGUCGUC-GCAGucGCU-CCUUGGuGCC- -5'
11093 5' -56.3 NC_002794.1 + 186286 0.66 0.933704
Target:  5'- gGCGGCAccGCGgccaGGCGGccGGucGCCGCGGc -3'
miRNA:   3'- -UGUCGU--CGCag--UCGCU--CCu-UGGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 149280 0.66 0.933704
Target:  5'- cCGGCGGCG-CGGCGGcucGCuCACGGg -3'
miRNA:   3'- uGUCGUCGCaGUCGCUccuUG-GUGCC- -5'
11093 5' -56.3 NC_002794.1 + 14495 0.66 0.923446
Target:  5'- cGCGGCGGCGgcccgcgcucgCGGCGcucguGGcgccgcucGGCCACGGc -3'
miRNA:   3'- -UGUCGUCGCa----------GUCGCu----CC--------UUGGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 94149 0.66 0.923446
Target:  5'- cGCGGCGGCGcuggaCGGUGGGGGGg-ACGGg -3'
miRNA:   3'- -UGUCGUCGCa----GUCGCUCCUUggUGCC- -5'
11093 5' -56.3 NC_002794.1 + 137719 0.66 0.927659
Target:  5'- cCGGCaacuuggAGCGUCAgGCGAugggccgacgcuuGGAACgGCGGc -3'
miRNA:   3'- uGUCG-------UCGCAGU-CGCU-------------CCUUGgUGCC- -5'
11093 5' -56.3 NC_002794.1 + 136511 0.66 0.928689
Target:  5'- uCAGCAGCGg-GGCGAGGuAGagAUGGu -3'
miRNA:   3'- uGUCGUCGCagUCGCUCC-UUggUGCC- -5'
11093 5' -56.3 NC_002794.1 + 140028 0.66 0.928689
Target:  5'- cGCGGCccccGCGggCGGCG-GGAGaCACGGa -3'
miRNA:   3'- -UGUCGu---CGCa-GUCGCuCCUUgGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 21898 0.66 0.928689
Target:  5'- cGCGGCcuGCGUCGGUG-GuGGCgGCGGa -3'
miRNA:   3'- -UGUCGu-CGCAGUCGCuCcUUGgUGCC- -5'
11093 5' -56.3 NC_002794.1 + 101815 0.66 0.928689
Target:  5'- cGCAGCGGCG-CGccgugcGCGAGGccaUGCGGg -3'
miRNA:   3'- -UGUCGUCGCaGU------CGCUCCuugGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 182473 0.66 0.930723
Target:  5'- --cGCGGCGUCAGCaGAuacagucccaaGGGGCCggucagguacgcguaGCGGa -3'
miRNA:   3'- uguCGUCGCAGUCG-CU-----------CCUUGG---------------UGCC- -5'
11093 5' -56.3 NC_002794.1 + 109936 0.66 0.933704
Target:  5'- cCAGUucugGGgGUCAGgGAGG-GCCGgGGg -3'
miRNA:   3'- uGUCG----UCgCAGUCgCUCCuUGGUgCC- -5'
11093 5' -56.3 NC_002794.1 + 55952 0.66 0.933704
Target:  5'- cGCAGCAGgaaCGgguagUAGuCGAGGuggauggcguAGCCGCGGg -3'
miRNA:   3'- -UGUCGUC---GCa----GUC-GCUCC----------UUGGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 34092 0.66 0.933704
Target:  5'- -gGGCAGcCGUCgGGCGGcccGGACCGCGa -3'
miRNA:   3'- ugUCGUC-GCAG-UCGCUc--CUUGGUGCc -5'
11093 5' -56.3 NC_002794.1 + 103900 0.66 0.933704
Target:  5'- -gAGCAGCGg-GGCGAGaacGCCGCGc -3'
miRNA:   3'- ugUCGUCGCagUCGCUCcu-UGGUGCc -5'
11093 5' -56.3 NC_002794.1 + 44557 0.66 0.933704
Target:  5'- gGCGGCGGCGcccguugacgUCAcGCGGGaccGAGCCACc- -3'
miRNA:   3'- -UGUCGUCGC----------AGU-CGCUC---CUUGGUGcc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.