miRNA display CGI


Results 1 - 20 of 529 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11094 5' -63.2 NC_002794.1 + 54227 0.65 0.697734
Target:  5'- cGCCGucucggaugaagcgGCCgAGCGCGCgGuccacggcGCCGCGuCGGg -3'
miRNA:   3'- aCGGC--------------UGG-UCGUGCGgC--------CGGUGC-GCC- -5'
11094 5' -63.2 NC_002794.1 + 152412 0.66 0.694918
Target:  5'- cGCCGACCuGCugccccGgGCCgucugucggcagcugGGCUACGCGu -3'
miRNA:   3'- aCGGCUGGuCG------UgCGG---------------CCGGUGCGCc -5'
11094 5' -63.2 NC_002794.1 + 104621 0.66 0.691156
Target:  5'- aGCuCGGCCAGCA-GCuCGuuGUCGCGCGc -3'
miRNA:   3'- aCG-GCUGGUCGUgCG-GC--CGGUGCGCc -5'
11094 5' -63.2 NC_002794.1 + 61826 0.66 0.691156
Target:  5'- gGCCG-CCGGCG-GCCGGCgucacuccgcucCGCGCc- -3'
miRNA:   3'- aCGGCuGGUCGUgCGGCCG------------GUGCGcc -5'
11094 5' -63.2 NC_002794.1 + 51270 0.66 0.691156
Target:  5'- gGCCGGgaGGCAgGCgCGGCC-CGCc- -3'
miRNA:   3'- aCGGCUggUCGUgCG-GCCGGuGCGcc -5'
11094 5' -63.2 NC_002794.1 + 182317 0.66 0.691156
Target:  5'- gGCgGACgGGCG-GUCGGgCGgGCGGg -3'
miRNA:   3'- aCGgCUGgUCGUgCGGCCgGUgCGCC- -5'
11094 5' -63.2 NC_002794.1 + 152585 0.66 0.691156
Target:  5'- cGgCGGCCGcCACGUCccuGCgGCGCGGg -3'
miRNA:   3'- aCgGCUGGUcGUGCGGc--CGgUGCGCC- -5'
11094 5' -63.2 NC_002794.1 + 152143 0.66 0.691156
Target:  5'- aGCCGGuucaacccgcuCCAGCGCcuGCgGGCCGC-CGa -3'
miRNA:   3'- aCGGCU-----------GGUCGUG--CGgCCGGUGcGCc -5'
11094 5' -63.2 NC_002794.1 + 147996 0.66 0.691156
Target:  5'- cUGCUGGCCuucgucCGCGUCGGCCuCGguCGGu -3'
miRNA:   3'- -ACGGCUGGuc----GUGCGGCCGGuGC--GCC- -5'
11094 5' -63.2 NC_002794.1 + 20149 0.66 0.691156
Target:  5'- aUGCCuACCA-C-CGCC-GCCugGCGGc -3'
miRNA:   3'- -ACGGcUGGUcGuGCGGcCGGugCGCC- -5'
11094 5' -63.2 NC_002794.1 + 193167 0.66 0.691156
Target:  5'- aGCagcACCAGCccGCGCCGcGCCAgCGUGu -3'
miRNA:   3'- aCGgc-UGGUCG--UGCGGC-CGGU-GCGCc -5'
11094 5' -63.2 NC_002794.1 + 114492 0.66 0.691156
Target:  5'- -cCCGGuCCAcGCGCGCCGGaCCGuCcCGGa -3'
miRNA:   3'- acGGCU-GGU-CGUGCGGCC-GGU-GcGCC- -5'
11094 5' -63.2 NC_002794.1 + 186119 0.66 0.691156
Target:  5'- cGCCGGguccccggaucuCCAGCACgGCCG-UCACGCc- -3'
miRNA:   3'- aCGGCU------------GGUCGUG-CGGCcGGUGCGcc -5'
11094 5' -63.2 NC_002794.1 + 191798 0.66 0.691156
Target:  5'- cGCuCGACC-GCcCGCuCGGCCGCuCGa -3'
miRNA:   3'- aCG-GCUGGuCGuGCG-GCCGGUGcGCc -5'
11094 5' -63.2 NC_002794.1 + 121466 0.66 0.690215
Target:  5'- gGUCGACCGuCGagacgacCGCCGGUUcggACGCGGc -3'
miRNA:   3'- aCGGCUGGUcGU-------GCGGCCGG---UGCGCC- -5'
11094 5' -63.2 NC_002794.1 + 19409 0.66 0.687389
Target:  5'- -cCCGACCcggaucgGGCGCGCCcuccuccgcgaccaGGCCccgaGCGGg -3'
miRNA:   3'- acGGCUGG-------UCGUGCGG--------------CCGGug--CGCC- -5'
11094 5' -63.2 NC_002794.1 + 145526 0.66 0.681725
Target:  5'- gGCCGGCCcgAGCGCcUCGGgCGCcccgaGCGGc -3'
miRNA:   3'- aCGGCUGG--UCGUGcGGCCgGUG-----CGCC- -5'
11094 5' -63.2 NC_002794.1 + 137148 0.66 0.681725
Target:  5'- cGcCCGGCCGGC-CGCCcucggucccGGCCGCuCGc -3'
miRNA:   3'- aC-GGCUGGUCGuGCGG---------CCGGUGcGCc -5'
11094 5' -63.2 NC_002794.1 + 101592 0.66 0.681725
Target:  5'- nGCCGGgggGGCGggUGCCGGCC-CGcCGGg -3'
miRNA:   3'- aCGGCUgg-UCGU--GCGGCCGGuGC-GCC- -5'
11094 5' -63.2 NC_002794.1 + 60143 0.66 0.681725
Target:  5'- gGCCGACCucagcuacuuccAGC-UGCCcaacaGcCCGCGCGGg -3'
miRNA:   3'- aCGGCUGG------------UCGuGCGGc----C-GGUGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.