Results 1 - 20 of 529 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11094 | 5' | -63.2 | NC_002794.1 | + | 54227 | 0.65 | 0.697734 |
Target: 5'- cGCCGucucggaugaagcgGCCgAGCGCGCgGuccacggcGCCGCGuCGGg -3' miRNA: 3'- aCGGC--------------UGG-UCGUGCGgC--------CGGUGC-GCC- -5' |
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11094 | 5' | -63.2 | NC_002794.1 | + | 60143 | 0.66 | 0.681725 |
Target: 5'- gGCCGACCucagcuacuuccAGC-UGCCcaacaGcCCGCGCGGg -3' miRNA: 3'- aCGGCUGG------------UCGuGCGGc----C-GGUGCGCC- -5' |
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11094 | 5' | -63.2 | NC_002794.1 | + | 61826 | 0.66 | 0.691156 |
Target: 5'- gGCCG-CCGGCG-GCCGGCgucacuccgcucCGCGCc- -3' miRNA: 3'- aCGGCuGGUCGUgCGGCCG------------GUGCGcc -5' |
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11094 | 5' | -63.2 | NC_002794.1 | + | 104621 | 0.66 | 0.691156 |
Target: 5'- aGCuCGGCCAGCA-GCuCGuuGUCGCGCGc -3' miRNA: 3'- aCG-GCUGGUCGUgCG-GC--CGGUGCGCc -5' |
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11094 | 5' | -63.2 | NC_002794.1 | + | 19409 | 0.66 | 0.687389 |
Target: 5'- -cCCGACCcggaucgGGCGCGCCcuccuccgcgaccaGGCCccgaGCGGg -3' miRNA: 3'- acGGCUGG-------UCGUGCGG--------------CCGGug--CGCC- -5' |
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11094 | 5' | -63.2 | NC_002794.1 | + | 121466 | 0.66 | 0.690215 |
Target: 5'- gGUCGACCGuCGagacgacCGCCGGUUcggACGCGGc -3' miRNA: 3'- aCGGCUGGUcGU-------GCGGCCGG---UGCGCC- -5' |
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11094 | 5' | -63.2 | NC_002794.1 | + | 179178 | 0.66 | 0.681725 |
Target: 5'- gGUCGuCCcggaccaccgcaGGCACGCCccGGCCG-GCGGc -3' miRNA: 3'- aCGGCuGG------------UCGUGCGG--CCGGUgCGCC- -5' |
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11094 | 5' | -63.2 | NC_002794.1 | + | 145526 | 0.66 | 0.681725 |
Target: 5'- gGCCGGCCcgAGCGCcUCGGgCGCcccgaGCGGc -3' miRNA: 3'- aCGGCUGG--UCGUGcGGCCgGUG-----CGCC- -5' |
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11094 | 5' | -63.2 | NC_002794.1 | + | 137148 | 0.66 | 0.681725 |
Target: 5'- cGcCCGGCCGGC-CGCCcucggucccGGCCGCuCGc -3' miRNA: 3'- aC-GGCUGGUCGuGCGG---------CCGGUGcGCc -5' |
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11094 | 5' | -63.2 | NC_002794.1 | + | 101592 | 0.66 | 0.681725 |
Target: 5'- nGCCGGgggGGCGggUGCCGGCC-CGcCGGg -3' miRNA: 3'- aCGGCUgg-UCGU--GCGGCCGGuGC-GCC- -5' |
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11094 | 5' | -63.2 | NC_002794.1 | + | 51270 | 0.66 | 0.691156 |
Target: 5'- gGCCGGgaGGCAgGCgCGGCC-CGCc- -3' miRNA: 3'- aCGGCUggUCGUgCG-GCCGGuGCGcc -5' |
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11094 | 5' | -63.2 | NC_002794.1 | + | 182317 | 0.66 | 0.691156 |
Target: 5'- gGCgGACgGGCG-GUCGGgCGgGCGGg -3' miRNA: 3'- aCGgCUGgUCGUgCGGCCgGUgCGCC- -5' |
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11094 | 5' | -63.2 | NC_002794.1 | + | 191798 | 0.66 | 0.691156 |
Target: 5'- cGCuCGACC-GCcCGCuCGGCCGCuCGa -3' miRNA: 3'- aCG-GCUGGuCGuGCG-GCCGGUGcGCc -5' |
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11094 | 5' | -63.2 | NC_002794.1 | + | 186119 | 0.66 | 0.691156 |
Target: 5'- cGCCGGguccccggaucuCCAGCACgGCCG-UCACGCc- -3' miRNA: 3'- aCGGCU------------GGUCGUG-CGGCcGGUGCGcc -5' |
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11094 | 5' | -63.2 | NC_002794.1 | + | 114492 | 0.66 | 0.691156 |
Target: 5'- -cCCGGuCCAcGCGCGCCGGaCCGuCcCGGa -3' miRNA: 3'- acGGCU-GGU-CGUGCGGCC-GGU-GcGCC- -5' |
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11094 | 5' | -63.2 | NC_002794.1 | + | 193167 | 0.66 | 0.691156 |
Target: 5'- aGCagcACCAGCccGCGCCGcGCCAgCGUGu -3' miRNA: 3'- aCGgc-UGGUCG--UGCGGC-CGGU-GCGCc -5' |
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11094 | 5' | -63.2 | NC_002794.1 | + | 20149 | 0.66 | 0.691156 |
Target: 5'- aUGCCuACCA-C-CGCC-GCCugGCGGc -3' miRNA: 3'- -ACGGcUGGUcGuGCGGcCGGugCGCC- -5' |
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11094 | 5' | -63.2 | NC_002794.1 | + | 147996 | 0.66 | 0.691156 |
Target: 5'- cUGCUGGCCuucgucCGCGUCGGCCuCGguCGGu -3' miRNA: 3'- -ACGGCUGGuc----GUGCGGCCGGuGC--GCC- -5' |
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11094 | 5' | -63.2 | NC_002794.1 | + | 152143 | 0.66 | 0.691156 |
Target: 5'- aGCCGGuucaacccgcuCCAGCGCcuGCgGGCCGC-CGa -3' miRNA: 3'- aCGGCU-----------GGUCGUG--CGgCCGGUGcGCc -5' |
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11094 | 5' | -63.2 | NC_002794.1 | + | 152585 | 0.66 | 0.691156 |
Target: 5'- cGgCGGCCGcCACGUCccuGCgGCGCGGg -3' miRNA: 3'- aCgGCUGGUcGUGCGGc--CGgUGCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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