miRNA display CGI


Results 1 - 20 of 529 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11094 5' -63.2 NC_002794.1 + 112340 0.87 0.034808
Target:  5'- cGCCGGCCGGCgGCGCCGGCgGCGgGGc -3'
miRNA:   3'- aCGGCUGGUCG-UGCGGCCGgUGCgCC- -5'
11094 5' -63.2 NC_002794.1 + 151703 0.84 0.06076
Target:  5'- cGCCGGCCgAGCGCGCCaGUCGCGCGa -3'
miRNA:   3'- aCGGCUGG-UCGUGCGGcCGGUGCGCc -5'
11094 5' -63.2 NC_002794.1 + 193438 0.82 0.076113
Target:  5'- aGCCGuCCGGCACGCCGcCCACGCa- -3'
miRNA:   3'- aCGGCuGGUCGUGCGGCcGGUGCGcc -5'
11094 5' -63.2 NC_002794.1 + 55630 0.82 0.082013
Target:  5'- cGCUGGCCAGCACGCgGGCCggcagGCGCa- -3'
miRNA:   3'- aCGGCUGGUCGUGCGgCCGG-----UGCGcc -5'
11094 5' -63.2 NC_002794.1 + 83424 0.8 0.107585
Target:  5'- aUGCUGGCCGGCAaGCCGGUCAC-CGGc -3'
miRNA:   3'- -ACGGCUGGUCGUgCGGCCGGUGcGCC- -5'
11094 5' -63.2 NC_002794.1 + 76836 0.8 0.112977
Target:  5'- gGCCGGCgAuGCGCGCCGGCCuCGuCGGc -3'
miRNA:   3'- aCGGCUGgU-CGUGCGGCCGGuGC-GCC- -5'
11094 5' -63.2 NC_002794.1 + 185763 0.79 0.115767
Target:  5'- cGCCGGCgCGGCcgcccgucacACGUCGGCCGgCGCGGg -3'
miRNA:   3'- aCGGCUG-GUCG----------UGCGGCCGGU-GCGCC- -5'
11094 5' -63.2 NC_002794.1 + 189455 0.78 0.137162
Target:  5'- aGUCGGCCAGCACGCgccgaaaGGCCGCG-GGc -3'
miRNA:   3'- aCGGCUGGUCGUGCGg------CCGGUGCgCC- -5'
11094 5' -63.2 NC_002794.1 + 58867 0.78 0.137162
Target:  5'- cGCCGACCGGCA-GCCGugcgcGCCGCGCa- -3'
miRNA:   3'- aCGGCUGGUCGUgCGGC-----CGGUGCGcc -5'
11094 5' -63.2 NC_002794.1 + 186633 0.78 0.137162
Target:  5'- aGCCGACaCAGCccGCGCggguCGGCCGCGCGc -3'
miRNA:   3'- aCGGCUG-GUCG--UGCG----GCCGGUGCGCc -5'
11094 5' -63.2 NC_002794.1 + 181751 0.78 0.138489
Target:  5'- gGCCGGCCAGCccgcugacgccgaugGCGCCGcGCCGcCGCGu -3'
miRNA:   3'- aCGGCUGGUCG---------------UGCGGC-CGGU-GCGCc -5'
11094 5' -63.2 NC_002794.1 + 113531 0.78 0.140501
Target:  5'- cGCCGGCuCGGCGuCGCCGGCCcggagcagGCGcCGGa -3'
miRNA:   3'- aCGGCUG-GUCGU-GCGGCCGG--------UGC-GCC- -5'
11094 5' -63.2 NC_002794.1 + 101555 0.78 0.150966
Target:  5'- cGCCGuuccgaacGCCGGCGggagUGCCGGCCGcCGCGGc -3'
miRNA:   3'- aCGGC--------UGGUCGU----GCGGCCGGU-GCGCC- -5'
11094 5' -63.2 NC_002794.1 + 117621 0.77 0.158332
Target:  5'- cGCCGAgcgaCAGgGCGCCGaCCGCGCGGc -3'
miRNA:   3'- aCGGCUg---GUCgUGCGGCcGGUGCGCC- -5'
11094 5' -63.2 NC_002794.1 + 194528 0.77 0.162136
Target:  5'- cGCCGGcCCAGCAgCGCCGccagcacgcCCGCGCGGa -3'
miRNA:   3'- aCGGCU-GGUCGU-GCGGCc--------GGUGCGCC- -5'
11094 5' -63.2 NC_002794.1 + 149391 0.77 0.16999
Target:  5'- cGCUGACCGGCaACGUC-GCCGCGCGu -3'
miRNA:   3'- aCGGCUGGUCG-UGCGGcCGGUGCGCc -5'
11094 5' -63.2 NC_002794.1 + 183679 0.77 0.174044
Target:  5'- cGCCGACgGGUcgaGCGCCcGCCGCGCGcGg -3'
miRNA:   3'- aCGGCUGgUCG---UGCGGcCGGUGCGC-C- -5'
11094 5' -63.2 NC_002794.1 + 14593 0.77 0.178183
Target:  5'- gGCCGugGCgAGCGCGCCGGgcaCCGCGaCGGg -3'
miRNA:   3'- aCGGC--UGgUCGUGCGGCC---GGUGC-GCC- -5'
11094 5' -63.2 NC_002794.1 + 32302 0.76 0.18241
Target:  5'- cGCCGcGgCGGcCGCGCCGGCCGCGgcCGGa -3'
miRNA:   3'- aCGGC-UgGUC-GUGCGGCCGGUGC--GCC- -5'
11094 5' -63.2 NC_002794.1 + 80437 0.76 0.18241
Target:  5'- cGCCG-CCGGCGgcCGCCGGCC-CGuCGGc -3'
miRNA:   3'- aCGGCuGGUCGU--GCGGCCGGuGC-GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.