miRNA display CGI


Results 21 - 40 of 529 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11094 5' -63.2 NC_002794.1 + 106984 0.76 0.186289
Target:  5'- gGCCGGCaCGGCgguggcgGCGCUGGCCgACGCGa -3'
miRNA:   3'- aCGGCUG-GUCG-------UGCGGCCGG-UGCGCc -5'
11094 5' -63.2 NC_002794.1 + 113867 0.76 0.195172
Target:  5'- -uCCGGCCAgGCGCGCuCGGCCgcggcgcgcgucgGCGCGGu -3'
miRNA:   3'- acGGCUGGU-CGUGCG-GCCGG-------------UGCGCC- -5'
11094 5' -63.2 NC_002794.1 + 71248 0.76 0.195625
Target:  5'- cGUgGACCGGCACGUagaacuugaGGuCCGCGCGGu -3'
miRNA:   3'- aCGgCUGGUCGUGCGg--------CC-GGUGCGCC- -5'
11094 5' -63.2 NC_002794.1 + 107221 0.76 0.195625
Target:  5'- cGCCGGgCGGCGCGCgacgggggCGGCguCGCGGa -3'
miRNA:   3'- aCGGCUgGUCGUGCG--------GCCGguGCGCC- -5'
11094 5' -63.2 NC_002794.1 + 119524 0.76 0.198827
Target:  5'- aGCCGGCCGcggaccccucguccGCGgccguCGCCGGCCACGUGu -3'
miRNA:   3'- aCGGCUGGU--------------CGU-----GCGGCCGGUGCGCc -5'
11094 5' -63.2 NC_002794.1 + 188656 0.75 0.20967
Target:  5'- aGcCCGGCCcgaaagaagaaGGCGaaguCGUCGGCCACGCGGu -3'
miRNA:   3'- aC-GGCUGG-----------UCGU----GCGGCCGGUGCGCC- -5'
11094 5' -63.2 NC_002794.1 + 134154 0.75 0.20967
Target:  5'- gGuCCGugUuGCugGCCguGGCCGCGCGGa -3'
miRNA:   3'- aC-GGCugGuCGugCGG--CCGGUGCGCC- -5'
11094 5' -63.2 NC_002794.1 + 19254 0.75 0.214542
Target:  5'- gUGCCGACCGGC-CG-CGGCCccCGUGGc -3'
miRNA:   3'- -ACGGCUGGUCGuGCgGCCGGu-GCGCC- -5'
11094 5' -63.2 NC_002794.1 + 100313 0.75 0.214542
Target:  5'- cGCCG-CUGGCACGCgCGGCCgGCGCa- -3'
miRNA:   3'- aCGGCuGGUCGUGCG-GCCGG-UGCGcc -5'
11094 5' -63.2 NC_002794.1 + 151647 0.75 0.214542
Target:  5'- cGCCGGCCGGCACuugGCUcGCCGC-CGGg -3'
miRNA:   3'- aCGGCUGGUCGUG---CGGcCGGUGcGCC- -5'
11094 5' -63.2 NC_002794.1 + 180294 0.75 0.214542
Target:  5'- cGCCG-CCGcaaCACGCCGGCCGgCGCGa -3'
miRNA:   3'- aCGGCuGGUc--GUGCGGCCGGU-GCGCc -5'
11094 5' -63.2 NC_002794.1 + 60639 0.75 0.214542
Target:  5'- -cCCGgcGCCGGCgGCGCCGGCCACcCGGc -3'
miRNA:   3'- acGGC--UGGUCG-UGCGGCCGGUGcGCC- -5'
11094 5' -63.2 NC_002794.1 + 23606 0.75 0.214542
Target:  5'- cGCCGACCcgaccccgcgGGCGC-CCGGaCGCGCGGc -3'
miRNA:   3'- aCGGCUGG----------UCGUGcGGCCgGUGCGCC- -5'
11094 5' -63.2 NC_002794.1 + 70903 0.75 0.21951
Target:  5'- gGUCGGugAGCACGUCGGCCAgGCGa -3'
miRNA:   3'- aCGGCUggUCGUGCGGCCGGUgCGCc -5'
11094 5' -63.2 NC_002794.1 + 130653 0.75 0.21951
Target:  5'- cGCCGcCCcGC-CGCCGGCCGCG-GGc -3'
miRNA:   3'- aCGGCuGGuCGuGCGGCCGGUGCgCC- -5'
11094 5' -63.2 NC_002794.1 + 108050 0.75 0.21951
Target:  5'- gUGCCGuucgugaaccacACCAGCuCGCCGuGCCugGCGu -3'
miRNA:   3'- -ACGGC------------UGGUCGuGCGGC-CGGugCGCc -5'
11094 5' -63.2 NC_002794.1 + 108152 0.75 0.221524
Target:  5'- cGCCG-CCGGgaGCGCCGGCgcgaagacgccgcgaCGCGCGGa -3'
miRNA:   3'- aCGGCuGGUCg-UGCGGCCG---------------GUGCGCC- -5'
11094 5' -63.2 NC_002794.1 + 185340 0.75 0.224576
Target:  5'- cGUCGACCGcucGCGCGCC-GCCGCgaGCGGg -3'
miRNA:   3'- aCGGCUGGU---CGUGCGGcCGGUG--CGCC- -5'
11094 5' -63.2 NC_002794.1 + 58438 0.75 0.224576
Target:  5'- cGCCGagGCCAcGCuGCGCCuGGCCGCGCuGGc -3'
miRNA:   3'- aCGGC--UGGU-CG-UGCGG-CCGGUGCG-CC- -5'
11094 5' -63.2 NC_002794.1 + 101802 0.75 0.229741
Target:  5'- cGCCGcugguuggcgcAgCGGCGCGCCgugcgcgaGGCCAUGCGGg -3'
miRNA:   3'- aCGGC-----------UgGUCGUGCGG--------CCGGUGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.