miRNA display CGI


Results 21 - 40 of 529 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11094 5' -63.2 NC_002794.1 + 148651 0.66 0.681725
Target:  5'- gUGCuCGGCUA-CGCGCCGaCCGaggaGCGGa -3'
miRNA:   3'- -ACG-GCUGGUcGUGCGGCcGGUg---CGCC- -5'
11094 5' -63.2 NC_002794.1 + 115068 0.66 0.681725
Target:  5'- cGCCGuCCAGUccacggccucgGCgGCCGcccgcaGCCGCGCGu -3'
miRNA:   3'- aCGGCuGGUCG-----------UG-CGGC------CGGUGCGCc -5'
11094 5' -63.2 NC_002794.1 + 95768 0.66 0.681725
Target:  5'- cGgCGGCC-GCgACGgCGGCCggggcgagagGCGCGGc -3'
miRNA:   3'- aCgGCUGGuCG-UGCgGCCGG----------UGCGCC- -5'
11094 5' -63.2 NC_002794.1 + 182986 0.66 0.681725
Target:  5'- aGCCGacgGCCGGCGCuucGCCGcgggcgccCCGCGCGc -3'
miRNA:   3'- aCGGC---UGGUCGUG---CGGCc-------GGUGCGCc -5'
11094 5' -63.2 NC_002794.1 + 181400 0.66 0.681725
Target:  5'- cGCCcgGGCCGGC-CGCCGccaccGCCAugucCGCGa -3'
miRNA:   3'- aCGG--CUGGUCGuGCGGC-----CGGU----GCGCc -5'
11094 5' -63.2 NC_002794.1 + 69818 0.66 0.681725
Target:  5'- cGCCgcGACCGGCGucCGcCCGGUC-CGCuGGc -3'
miRNA:   3'- aCGG--CUGGUCGU--GC-GGCCGGuGCG-CC- -5'
11094 5' -63.2 NC_002794.1 + 60143 0.66 0.681725
Target:  5'- gGCCGACCucagcuacuuccAGC-UGCCcaacaGcCCGCGCGGg -3'
miRNA:   3'- aCGGCUGG------------UCGuGCGGc----C-GGUGCGCC- -5'
11094 5' -63.2 NC_002794.1 + 101592 0.66 0.681725
Target:  5'- nGCCGGgggGGCGggUGCCGGCC-CGcCGGg -3'
miRNA:   3'- aCGGCUgg-UCGU--GCGGCCGGuGC-GCC- -5'
11094 5' -63.2 NC_002794.1 + 137148 0.66 0.681725
Target:  5'- cGcCCGGCCGGC-CGCCcucggucccGGCCGCuCGc -3'
miRNA:   3'- aC-GGCUGGUCGuGCGG---------CCGGUGcGCc -5'
11094 5' -63.2 NC_002794.1 + 145526 0.66 0.681725
Target:  5'- gGCCGGCCcgAGCGCcUCGGgCGCcccgaGCGGc -3'
miRNA:   3'- aCGGCUGG--UCGUGcGGCCgGUG-----CGCC- -5'
11094 5' -63.2 NC_002794.1 + 179178 0.66 0.681725
Target:  5'- gGUCGuCCcggaccaccgcaGGCACGCCccGGCCG-GCGGc -3'
miRNA:   3'- aCGGCuGG------------UCGUGCGG--CCGGUgCGCC- -5'
11094 5' -63.2 NC_002794.1 + 53129 0.66 0.68078
Target:  5'- cGUCGACCgcGGCGCucaGCCcggcauaGGCCAgCGCGa -3'
miRNA:   3'- aCGGCUGG--UCGUG---CGG-------CCGGU-GCGCc -5'
11094 5' -63.2 NC_002794.1 + 63082 0.66 0.68078
Target:  5'- gGCCGGCuguacuuCAGCGCGCUGccgcaCCGCGCc- -3'
miRNA:   3'- aCGGCUG-------GUCGUGCGGCc----GGUGCGcc -5'
11094 5' -63.2 NC_002794.1 + 147045 0.66 0.679834
Target:  5'- aGCCG-UCGGCG-GCCGGUCuaaggacggagcCGCGGg -3'
miRNA:   3'- aCGGCuGGUCGUgCGGCCGGu-----------GCGCC- -5'
11094 5' -63.2 NC_002794.1 + 37901 0.66 0.676048
Target:  5'- cGgCGGCagCGGCuCGCCGGCCucaacgucaaccgcCGCGGc -3'
miRNA:   3'- aCgGCUG--GUCGuGCGGCCGGu-------------GCGCC- -5'
11094 5' -63.2 NC_002794.1 + 62798 0.66 0.672258
Target:  5'- gGCCccuaccucuCCGGCACGCCGGCgC-CGUa- -3'
miRNA:   3'- aCGGcu-------GGUCGUGCGGCCG-GuGCGcc -5'
11094 5' -63.2 NC_002794.1 + 45889 0.66 0.672258
Target:  5'- aUGcCCGACCgAGCccCGCCcGCCGC-CGGc -3'
miRNA:   3'- -AC-GGCUGG-UCGu-GCGGcCGGUGcGCC- -5'
11094 5' -63.2 NC_002794.1 + 49244 0.66 0.672258
Target:  5'- cGUCGACgGGCGC-CCGcgcacCCACGaCGGg -3'
miRNA:   3'- aCGGCUGgUCGUGcGGCc----GGUGC-GCC- -5'
11094 5' -63.2 NC_002794.1 + 192962 0.66 0.672258
Target:  5'- gGCCGACgAGC-CGUgcaGGaCCaggGCGCGGu -3'
miRNA:   3'- aCGGCUGgUCGuGCGg--CC-GG---UGCGCC- -5'
11094 5' -63.2 NC_002794.1 + 12512 0.66 0.672258
Target:  5'- cGCuCGACCGGCG-GCUGGgUggauuggaaggaACGCGGc -3'
miRNA:   3'- aCG-GCUGGUCGUgCGGCCgG------------UGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.