miRNA display CGI


Results 1 - 20 of 529 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11094 5' -63.2 NC_002794.1 + 148 0.67 0.623679
Target:  5'- cGCCGcaggggcgcACCAGCACGCCcGcGCCcccaaacACGCu- -3'
miRNA:   3'- aCGGC---------UGGUCGUGCGG-C-CGG-------UGCGcc -5'
11094 5' -63.2 NC_002794.1 + 259 0.66 0.640852
Target:  5'- cUGCCG-CCGcGCGCGCggacgcgaggacggCGGCCcugGCGCGc -3'
miRNA:   3'- -ACGGCuGGU-CGUGCG--------------GCCGG---UGCGCc -5'
11094 5' -63.2 NC_002794.1 + 380 0.68 0.54898
Target:  5'- cGCgCGAuccCCGGCACGCUG-CCAC-CGGu -3'
miRNA:   3'- aCG-GCU---GGUCGUGCGGCcGGUGcGCC- -5'
11094 5' -63.2 NC_002794.1 + 881 0.73 0.306287
Target:  5'- gGUCGGCguGCGCGCgGGCCGgGUGc -3'
miRNA:   3'- aCGGCUGguCGUGCGgCCGGUgCGCc -5'
11094 5' -63.2 NC_002794.1 + 1255 0.71 0.408917
Target:  5'- cGCCcggaGGCCAGUguGCGCCaGCCAC-CGGc -3'
miRNA:   3'- aCGG----CUGGUCG--UGCGGcCGGUGcGCC- -5'
11094 5' -63.2 NC_002794.1 + 1284 0.67 0.633219
Target:  5'- nGCCuucuaagGACCGGC-CGCUGGCCAaaaugaggaaGCGu -3'
miRNA:   3'- aCGG-------CUGGUCGuGCGGCCGGUg---------CGCc -5'
11094 5' -63.2 NC_002794.1 + 6593 0.67 0.605571
Target:  5'- cGCCG-CCAugcucGCGgGCCGgaaccaGCCACGCGu -3'
miRNA:   3'- aCGGCuGGU-----CGUgCGGC------CGGUGCGCc -5'
11094 5' -63.2 NC_002794.1 + 6918 0.68 0.567701
Target:  5'- aUGauGACCAGaa-GCCGcagccGCCGCGCGGc -3'
miRNA:   3'- -ACggCUGGUCgugCGGC-----CGGUGCGCC- -5'
11094 5' -63.2 NC_002794.1 + 10010 0.66 0.653245
Target:  5'- aUGCCGcCCAGCACccagGCUagaggGGCCAC-CGa -3'
miRNA:   3'- -ACGGCuGGUCGUG----CGG-----CCGGUGcGCc -5'
11094 5' -63.2 NC_002794.1 + 11381 0.71 0.377482
Target:  5'- aGCCGGCCucgaccCACGCCGGCUACa--- -3'
miRNA:   3'- aCGGCUGGuc----GUGCGGCCGGUGcgcc -5'
11094 5' -63.2 NC_002794.1 + 11654 0.72 0.319664
Target:  5'- gGCCGACgacgCGGCcCGCCGGCCACa--- -3'
miRNA:   3'- aCGGCUG----GUCGuGCGGCCGGUGcgcc -5'
11094 5' -63.2 NC_002794.1 + 12159 0.67 0.596064
Target:  5'- gGCCGAUCGcccggaucgucGC-CGCCGacGCCGcCGCGGc -3'
miRNA:   3'- aCGGCUGGU-----------CGuGCGGC--CGGU-GCGCC- -5'
11094 5' -63.2 NC_002794.1 + 12215 0.74 0.262862
Target:  5'- gUGCCGGCggcguCGGCgGCGCCGGCgGCGCc- -3'
miRNA:   3'- -ACGGCUG-----GUCG-UGCGGCCGgUGCGcc -5'
11094 5' -63.2 NC_002794.1 + 12382 0.69 0.503117
Target:  5'- cGCCuGCCGcGCuCGCCuGGCCgacaaccgcACGCGGa -3'
miRNA:   3'- aCGGcUGGU-CGuGCGG-CCGG---------UGCGCC- -5'
11094 5' -63.2 NC_002794.1 + 12512 0.66 0.672258
Target:  5'- cGCuCGACCGGCG-GCUGGgUggauuggaaggaACGCGGc -3'
miRNA:   3'- aCG-GCUGGUCGUgCGGCCgG------------UGCGCC- -5'
11094 5' -63.2 NC_002794.1 + 12611 0.68 0.571465
Target:  5'- cGCC-ACCAGCGCGUCuggGGCCgcuucgagcacaccuACGaCGGg -3'
miRNA:   3'- aCGGcUGGUCGUGCGG---CCGG---------------UGC-GCC- -5'
11094 5' -63.2 NC_002794.1 + 13753 0.66 0.661811
Target:  5'- gGCCGAcaCCAGacuCGCCGccccggaGCCACcCGGg -3'
miRNA:   3'- aCGGCU--GGUCgu-GCGGC-------CGGUGcGCC- -5'
11094 5' -63.2 NC_002794.1 + 14466 0.74 0.25141
Target:  5'- gUGUCGAgCGGCGCGCCGcGCUcgcuguuCGCGGc -3'
miRNA:   3'- -ACGGCUgGUCGUGCGGC-CGGu------GCGCC- -5'
11094 5' -63.2 NC_002794.1 + 14593 0.77 0.178183
Target:  5'- gGCCGugGCgAGCGCGCCGGgcaCCGCGaCGGg -3'
miRNA:   3'- aCGGC--UGgUCGUGCGGCC---GGUGC-GCC- -5'
11094 5' -63.2 NC_002794.1 + 14637 0.69 0.512165
Target:  5'- gGCCgGGCaCGGagACGCCGGCgC-CGCGGc -3'
miRNA:   3'- aCGG-CUG-GUCg-UGCGGCCG-GuGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.