miRNA display CGI


Results 21 - 40 of 529 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11094 5' -63.2 NC_002794.1 + 15269 0.67 0.615097
Target:  5'- cGUCGGCgAGC-CGCgCGGCUcccuccGCGCGa -3'
miRNA:   3'- aCGGCUGgUCGuGCG-GCCGG------UGCGCc -5'
11094 5' -63.2 NC_002794.1 + 16751 0.68 0.530456
Target:  5'- uUGCCGGCCccaccgaaaaucGGCACGaaCGGCaCGCGCc- -3'
miRNA:   3'- -ACGGCUGG------------UCGUGCg-GCCG-GUGCGcc -5'
11094 5' -63.2 NC_002794.1 + 17438 0.71 0.385188
Target:  5'- cGCCG-CCGGCGCuCgGGCC-CGCGa -3'
miRNA:   3'- aCGGCuGGUCGUGcGgCCGGuGCGCc -5'
11094 5' -63.2 NC_002794.1 + 17666 0.72 0.319664
Target:  5'- cGCCG-CCAccGC-CGCCGGCCcCgGCGGa -3'
miRNA:   3'- aCGGCuGGU--CGuGCGGCCGGuG-CGCC- -5'
11094 5' -63.2 NC_002794.1 + 17929 0.67 0.615097
Target:  5'- -aCCGGCCGGCuCcCCGaCCugGCGGc -3'
miRNA:   3'- acGGCUGGUCGuGcGGCcGGugCGCC- -5'
11094 5' -63.2 NC_002794.1 + 18254 0.69 0.476408
Target:  5'- gGCCGACCGGCGa-CCGcGagaUGCGCGGc -3'
miRNA:   3'- aCGGCUGGUCGUgcGGC-Cg--GUGCGCC- -5'
11094 5' -63.2 NC_002794.1 + 18690 0.74 0.240372
Target:  5'- cGCCGucuCCGGCACGgCGGCgGCGgucCGGa -3'
miRNA:   3'- aCGGCu--GGUCGUGCgGCCGgUGC---GCC- -5'
11094 5' -63.2 NC_002794.1 + 18728 0.73 0.287034
Target:  5'- aGCCGACgAGC-CGCCccaacGCCACGaCGGc -3'
miRNA:   3'- aCGGCUGgUCGuGCGGc----CGGUGC-GCC- -5'
11094 5' -63.2 NC_002794.1 + 18806 0.71 0.385188
Target:  5'- cGCCGGCCaacgggucGGCgACcUCGGCCGgCGCGGa -3'
miRNA:   3'- aCGGCUGG--------UCG-UGcGGCCGGU-GCGCC- -5'
11094 5' -63.2 NC_002794.1 + 18863 0.67 0.615097
Target:  5'- cGCCGAUC-GCcaACGCCaccgacGCCGgCGCGGa -3'
miRNA:   3'- aCGGCUGGuCG--UGCGGc-----CGGU-GCGCC- -5'
11094 5' -63.2 NC_002794.1 + 19254 0.75 0.214542
Target:  5'- gUGCCGACCGGC-CG-CGGCCccCGUGGc -3'
miRNA:   3'- -ACGGCUGGUCGuGCgGCCGGu-GCGCC- -5'
11094 5' -63.2 NC_002794.1 + 19330 0.71 0.385188
Target:  5'- cUGgCGACCcGCGCGCCGGUCACc--- -3'
miRNA:   3'- -ACgGCUGGuCGUGCGGCCGGUGcgcc -5'
11094 5' -63.2 NC_002794.1 + 19409 0.66 0.687389
Target:  5'- -cCCGACCcggaucgGGCGCGCCcuccuccgcgaccaGGCCccgaGCGGg -3'
miRNA:   3'- acGGCUGG-------UCGUGCGG--------------CCGGug--CGCC- -5'
11094 5' -63.2 NC_002794.1 + 19517 0.72 0.319664
Target:  5'- cGCCGcUCGGaGCGCCGGCgCGgCGCGGc -3'
miRNA:   3'- aCGGCuGGUCgUGCGGCCG-GU-GCGCC- -5'
11094 5' -63.2 NC_002794.1 + 20050 0.68 0.567701
Target:  5'- cGCuCGACCAGauCGCGCUGuuCgACGCGGu -3'
miRNA:   3'- aCG-GCUGGUC--GUGCGGCcgG-UGCGCC- -5'
11094 5' -63.2 NC_002794.1 + 20149 0.66 0.691156
Target:  5'- aUGCCuACCA-C-CGCC-GCCugGCGGc -3'
miRNA:   3'- -ACGGcUGGUcGuGCGGcCGGugCGCC- -5'
11094 5' -63.2 NC_002794.1 + 21949 0.67 0.624633
Target:  5'- cGUCGAa-GGC-CGUCGGCCGCucccGCGGc -3'
miRNA:   3'- aCGGCUggUCGuGCGGCCGGUG----CGCC- -5'
11094 5' -63.2 NC_002794.1 + 21996 0.71 0.362387
Target:  5'- cGUCG-CCGGCAaGCCGGCCAagGCGu -3'
miRNA:   3'- aCGGCuGGUCGUgCGGCCGGUg-CGCc -5'
11094 5' -63.2 NC_002794.1 + 22564 0.7 0.433538
Target:  5'- cGCCGACaCGGCACgGCCGcuguccaaGUCGCGCu- -3'
miRNA:   3'- aCGGCUG-GUCGUG-CGGC--------CGGUGCGcc -5'
11094 5' -63.2 NC_002794.1 + 22924 0.68 0.539691
Target:  5'- gGCCGccaaACCGGCACccaucgGCUGGCCGa-CGGg -3'
miRNA:   3'- aCGGC----UGGUCGUG------CGGCCGGUgcGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.