miRNA display CGI


Results 1 - 20 of 529 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11094 5' -63.2 NC_002794.1 + 195588 0.67 0.586579
Target:  5'- cGCCgGACCGGCcgacGCGCCc-CCGCGCuGGc -3'
miRNA:   3'- aCGG-CUGGUCG----UGCGGccGGUGCG-CC- -5'
11094 5' -63.2 NC_002794.1 + 195471 0.67 0.605571
Target:  5'- cGCuUGcCCGGacuCGCCcGCCGCGCGGc -3'
miRNA:   3'- aCG-GCuGGUCgu-GCGGcCGGUGCGCC- -5'
11094 5' -63.2 NC_002794.1 + 194973 0.67 0.605571
Target:  5'- cGCCGGCUcguacaGGCacaGCGCCGcGCgCACGCc- -3'
miRNA:   3'- aCGGCUGG------UCG---UGCGGC-CG-GUGCGcc -5'
11094 5' -63.2 NC_002794.1 + 194634 0.69 0.494139
Target:  5'- cGCCugguccaccACCAGCaccuGCGUCGGCUGCGcCGGg -3'
miRNA:   3'- aCGGc--------UGGUCG----UGCGGCCGGUGC-GCC- -5'
11094 5' -63.2 NC_002794.1 + 194528 0.77 0.162136
Target:  5'- cGCCGGcCCAGCAgCGCCGccagcacgcCCGCGCGGa -3'
miRNA:   3'- aCGGCU-GGUCGU-GCGGCc--------GGUGCGCC- -5'
11094 5' -63.2 NC_002794.1 + 194492 0.71 0.362387
Target:  5'- aGCCGcCCcuccGCGC-CCGGCC-CGCGGc -3'
miRNA:   3'- aCGGCuGGu---CGUGcGGCCGGuGCGCC- -5'
11094 5' -63.2 NC_002794.1 + 194301 0.74 0.268746
Target:  5'- aGUCGuCCAGCgccaGCGCCuGCCGCaGCGGa -3'
miRNA:   3'- aCGGCuGGUCG----UGCGGcCGGUG-CGCC- -5'
11094 5' -63.2 NC_002794.1 + 194163 0.67 0.602717
Target:  5'- aGCCcuGCCGGCGCGCCuucuccguccgcacGuucaccGCCGCGUGGu -3'
miRNA:   3'- aCGGc-UGGUCGUGCGG--------------C------CGGUGCGCC- -5'
11094 5' -63.2 NC_002794.1 + 193748 0.66 0.653245
Target:  5'- gGCuuCGGCgAGCGacCGCCGGCCcCGCu- -3'
miRNA:   3'- aCG--GCUGgUCGU--GCGGCCGGuGCGcc -5'
11094 5' -63.2 NC_002794.1 + 193438 0.82 0.076113
Target:  5'- aGCCGuCCGGCACGCCGcCCACGCa- -3'
miRNA:   3'- aCGGCuGGUCGUGCGGCcGGUGCGcc -5'
11094 5' -63.2 NC_002794.1 + 193167 0.66 0.691156
Target:  5'- aGCagcACCAGCccGCGCCGcGCCAgCGUGu -3'
miRNA:   3'- aCGgc-UGGUCG--UGCGGC-CGGU-GCGCc -5'
11094 5' -63.2 NC_002794.1 + 193058 0.72 0.326514
Target:  5'- cGcCCGcACCGGC-UGCgGGCCGuCGCGGg -3'
miRNA:   3'- aC-GGC-UGGUCGuGCGgCCGGU-GCGCC- -5'
11094 5' -63.2 NC_002794.1 + 192962 0.66 0.672258
Target:  5'- gGCCGACgAGC-CGUgcaGGaCCaggGCGCGGu -3'
miRNA:   3'- aCGGCUGgUCGuGCGg--CC-GG---UGCGCC- -5'
11094 5' -63.2 NC_002794.1 + 192667 0.66 0.653245
Target:  5'- cGCgCGACuCGaaGCGCCGGCCGC-CGu -3'
miRNA:   3'- aCG-GCUG-GUcgUGCGGCCGGUGcGCc -5'
11094 5' -63.2 NC_002794.1 + 192639 0.74 0.24584
Target:  5'- gGCCGcuCCAGcCGCGCC-GCCGCGCGc -3'
miRNA:   3'- aCGGCu-GGUC-GUGCGGcCGGUGCGCc -5'
11094 5' -63.2 NC_002794.1 + 192421 0.68 0.566761
Target:  5'- cGCCGcgacggguccgcgGCCGGCGCGUCGcgcgccucgcaGUCGCGCGc -3'
miRNA:   3'- aCGGC-------------UGGUCGUGCGGC-----------CGGUGCGCc -5'
11094 5' -63.2 NC_002794.1 + 192371 0.72 0.326514
Target:  5'- cGCCGACCgAGCGCGggcugaCCGccaccGCCGCGcCGGg -3'
miRNA:   3'- aCGGCUGG-UCGUGC------GGC-----CGGUGC-GCC- -5'
11094 5' -63.2 NC_002794.1 + 192231 0.67 0.624633
Target:  5'- aGaaGAUCGGCGCuGCCGucGCCgacgGCGCGGu -3'
miRNA:   3'- aCggCUGGUCGUG-CGGC--CGG----UGCGCC- -5'
11094 5' -63.2 NC_002794.1 + 191798 0.66 0.691156
Target:  5'- cGCuCGACC-GCcCGCuCGGCCGCuCGa -3'
miRNA:   3'- aCG-GCUGGuCGuGCG-GCCGGUGcGCc -5'
11094 5' -63.2 NC_002794.1 + 191645 0.69 0.485235
Target:  5'- cGCCGuCCAGCAgccCGCCGGgggaCgGCGcCGGc -3'
miRNA:   3'- aCGGCuGGUCGU---GCGGCC----GgUGC-GCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.