miRNA display CGI


Results 1 - 20 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11095 3' -59.4 NC_002794.1 + 53603 0.66 0.84923
Target:  5'- --cGGCGucACCGGGcCGccgcAGCGUCGGAc -3'
miRNA:   3'- cuaCCGC--UGGCCUuGC----UCGCGGCCUc -5'
11095 3' -59.4 NC_002794.1 + 48617 0.66 0.84923
Target:  5'- --cGGCcucaGACgCGGAGCGGcCGUCGGGGc -3'
miRNA:   3'- cuaCCG----CUG-GCCUUGCUcGCGGCCUC- -5'
11095 3' -59.4 NC_002794.1 + 182965 0.66 0.84923
Target:  5'- --cGGCGGCCGGcuccucguuCGAGCcgacgGCCGGc- -3'
miRNA:   3'- cuaCCGCUGGCCuu-------GCUCG-----CGGCCuc -5'
11095 3' -59.4 NC_002794.1 + 38434 0.66 0.84923
Target:  5'- cAUGGCGgcggGCCGGAcUGAGgaGCCGGc- -3'
miRNA:   3'- cUACCGC----UGGCCUuGCUCg-CGGCCuc -5'
11095 3' -59.4 NC_002794.1 + 66963 0.66 0.84923
Target:  5'- --cGGCGagucgcucGCCGGGG-GAGCGUCGcGAGc -3'
miRNA:   3'- cuaCCGC--------UGGCCUUgCUCGCGGC-CUC- -5'
11095 3' -59.4 NC_002794.1 + 55980 0.66 0.84923
Target:  5'- gGAUGGCGuaGCCGcGGGCGAGCaCCa--- -3'
miRNA:   3'- -CUACCGC--UGGC-CUUGCUCGcGGccuc -5'
11095 3' -59.4 NC_002794.1 + 142466 0.66 0.841548
Target:  5'- cGAUGaGCGccggcACCGuGGACGcgugcGGCGCCGGcAGc -3'
miRNA:   3'- -CUAC-CGC-----UGGC-CUUGC-----UCGCGGCC-UC- -5'
11095 3' -59.4 NC_002794.1 + 180365 0.66 0.841548
Target:  5'- --aGGaCGACCGGcGCGAGgacgcUGCCGGc- -3'
miRNA:   3'- cuaCC-GCUGGCCuUGCUC-----GCGGCCuc -5'
11095 3' -59.4 NC_002794.1 + 184837 0.66 0.841548
Target:  5'- --gGGCGcACCGcGcAGCGAuacGUGCCGGAc -3'
miRNA:   3'- cuaCCGC-UGGC-C-UUGCU---CGCGGCCUc -5'
11095 3' -59.4 NC_002794.1 + 183160 0.66 0.841548
Target:  5'- ---cGCGGCCGGGcugccCGAGCcgGUCGGGGa -3'
miRNA:   3'- cuacCGCUGGCCUu----GCUCG--CGGCCUC- -5'
11095 3' -59.4 NC_002794.1 + 84313 0.66 0.841548
Target:  5'- -cUGGCGACCGGGccgccCGAGaGCCGc-- -3'
miRNA:   3'- cuACCGCUGGCCUu----GCUCgCGGCcuc -5'
11095 3' -59.4 NC_002794.1 + 55148 0.66 0.841548
Target:  5'- --cGGC-ACCGGGAgacacgaguCGAGCGCCGa-- -3'
miRNA:   3'- cuaCCGcUGGCCUU---------GCUCGCGGCcuc -5'
11095 3' -59.4 NC_002794.1 + 91886 0.66 0.84077
Target:  5'- --cGGCGGCCGcGACGAGCaguucacGCCGcAGc -3'
miRNA:   3'- cuaCCGCUGGCcUUGCUCG-------CGGCcUC- -5'
11095 3' -59.4 NC_002794.1 + 107528 0.66 0.833692
Target:  5'- --cGaCGGCCGGcGCG-GCGCCGGcGg -3'
miRNA:   3'- cuaCcGCUGGCCuUGCuCGCGGCCuC- -5'
11095 3' -59.4 NC_002794.1 + 143724 0.66 0.833692
Target:  5'- gGcgGGCGucguccucgcccGCCGG-ACGcGcCGCCGGGGg -3'
miRNA:   3'- -CuaCCGC------------UGGCCuUGCuC-GCGGCCUC- -5'
11095 3' -59.4 NC_002794.1 + 107215 0.66 0.833692
Target:  5'- --cGGCGccGCCGGGcgGCGcGCGaCGGGGg -3'
miRNA:   3'- cuaCCGC--UGGCCU--UGCuCGCgGCCUC- -5'
11095 3' -59.4 NC_002794.1 + 93849 0.66 0.833692
Target:  5'- cAUGGaCGGCCGcGGcgGCGAGCcGCCcGAGu -3'
miRNA:   3'- cUACC-GCUGGC-CU--UGCUCG-CGGcCUC- -5'
11095 3' -59.4 NC_002794.1 + 86754 0.66 0.833692
Target:  5'- --cGaGCGaaGCCGGGugGAuCGCCGGGa -3'
miRNA:   3'- cuaC-CGC--UGGCCUugCUcGCGGCCUc -5'
11095 3' -59.4 NC_002794.1 + 114617 0.66 0.832897
Target:  5'- aGGUGGCGcagcagguccucgGCgCGGAGCucGAGCuGCCGGuGc -3'
miRNA:   3'- -CUACCGC-------------UG-GCCUUG--CUCG-CGGCCuC- -5'
11095 3' -59.4 NC_002794.1 + 142223 0.66 0.825669
Target:  5'- --cGGCgGugCGGG--GAGCGgCGGAGg -3'
miRNA:   3'- cuaCCG-CugGCCUugCUCGCgGCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.