miRNA display CGI


Results 1 - 11 of 11 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11095 5' -48.4 NC_002794.1 + 16205 0.66 0.999894
Target:  5'- cGCCUgggcacGGUCGAggUCCGGCg--- -3'
miRNA:   3'- -CGGAaauua-UCAGCUa-AGGCCGgagc -5'
11095 5' -48.4 NC_002794.1 + 65726 0.66 0.999894
Target:  5'- cGCCagc---AGUUGccgUCCGGCCUCc -3'
miRNA:   3'- -CGGaaauuaUCAGCua-AGGCCGGAGc -5'
11095 5' -48.4 NC_002794.1 + 68102 0.66 0.999894
Target:  5'- uGCCUgaccguGUUGAacCgCGGCCUCGa -3'
miRNA:   3'- -CGGAaauuauCAGCUaaG-GCCGGAGC- -5'
11095 5' -48.4 NC_002794.1 + 40746 0.66 0.999863
Target:  5'- gGCCgc-AGUAGUCGAU-CaaggugugggaGGCCUUGg -3'
miRNA:   3'- -CGGaaaUUAUCAGCUAaGg----------CCGGAGC- -5'
11095 5' -48.4 NC_002794.1 + 17118 0.66 0.999775
Target:  5'- cGCCUUUccGAcGGUCGAagCCGGCg--- -3'
miRNA:   3'- -CGGAAA--UUaUCAGCUaaGGCCGgagc -5'
11095 5' -48.4 NC_002794.1 + 76829 0.66 0.999734
Target:  5'- cGCCagcggccggCGAUgcgcgCCGGCCUCGu -3'
miRNA:   3'- -CGGaaauuaucaGCUAa----GGCCGGAGC- -5'
11095 5' -48.4 NC_002794.1 + 98988 0.67 0.999641
Target:  5'- gGCCUc-GGUGGUCGG---CGGCUUCGu -3'
miRNA:   3'- -CGGAaaUUAUCAGCUaagGCCGGAGC- -5'
11095 5' -48.4 NC_002794.1 + 116912 0.67 0.999589
Target:  5'- gGCCgguccggcGUCGGcUCCGGCgUCGu -3'
miRNA:   3'- -CGGaaauuau-CAGCUaAGGCCGgAGC- -5'
11095 5' -48.4 NC_002794.1 + 160962 0.68 0.998966
Target:  5'- gGUCUUUGgaAUAGgugacUCGGUUCUGGCCg-- -3'
miRNA:   3'- -CGGAAAU--UAUC-----AGCUAAGGCCGGagc -5'
11095 5' -48.4 NC_002794.1 + 65244 0.69 0.996392
Target:  5'- cGCCgcggc-GG-CGA-UCCGGCCUCGc -3'
miRNA:   3'- -CGGaaauuaUCaGCUaAGGCCGGAGC- -5'
11095 5' -48.4 NC_002794.1 + 116192 0.74 0.935944
Target:  5'- aUCUUUGuacaGGUCGAUgaUCaCGGCCUCGg -3'
miRNA:   3'- cGGAAAUua--UCAGCUA--AG-GCCGGAGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.