miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11096 5' -57.5 NC_002794.1 + 116366 0.66 0.90843
Target:  5'- gCGGUCCGaccgGUCGGUGGcgUgCGGGUc -3'
miRNA:   3'- -GUUAGGCa---CGGCCACCuaGgGCUCGu -5'
11096 5' -57.5 NC_002794.1 + 181358 0.66 0.90843
Target:  5'- cCAAUCCG-GcCCGGUugaGGGUCaCGGGCc -3'
miRNA:   3'- -GUUAGGCaC-GGCCA---CCUAGgGCUCGu -5'
11096 5' -57.5 NC_002794.1 + 90570 0.66 0.90843
Target:  5'- ---cCCG-G-CGGcGGGUCCCGGGCGc -3'
miRNA:   3'- guuaGGCaCgGCCaCCUAGGGCUCGU- -5'
11096 5' -57.5 NC_002794.1 + 148121 0.66 0.90239
Target:  5'- aCGGUCgGUGUCGGgcgcGGGgccgCCgGGGCGa -3'
miRNA:   3'- -GUUAGgCACGGCCa---CCUa---GGgCUCGU- -5'
11096 5' -57.5 NC_002794.1 + 169454 0.66 0.90239
Target:  5'- ---aCgGUGCaaCGGUGGGUUCgGGGCGa -3'
miRNA:   3'- guuaGgCACG--GCCACCUAGGgCUCGU- -5'
11096 5' -57.5 NC_002794.1 + 176480 0.66 0.90239
Target:  5'- cCAGaCCGUGUCGGuUGGuUCUcucaCGAGCAc -3'
miRNA:   3'- -GUUaGGCACGGCC-ACCuAGG----GCUCGU- -5'
11096 5' -57.5 NC_002794.1 + 43279 0.66 0.894851
Target:  5'- aGAUCCGcUGCCGGcUGuccuccagcaCCCGGGCGg -3'
miRNA:   3'- gUUAGGC-ACGGCC-ACcua-------GGGCUCGU- -5'
11096 5' -57.5 NC_002794.1 + 144529 0.66 0.88965
Target:  5'- cCAGaCCGUGCUGGUGGAacugUCgGAGg- -3'
miRNA:   3'- -GUUaGGCACGGCCACCUa---GGgCUCgu -5'
11096 5' -57.5 NC_002794.1 + 123752 0.66 0.88965
Target:  5'- cCGAgCCGUGCCGcu---UCCCGGGCGu -3'
miRNA:   3'- -GUUaGGCACGGCcaccuAGGGCUCGU- -5'
11096 5' -57.5 NC_002794.1 + 183661 0.67 0.868939
Target:  5'- --cUCCGcGCCGGg----CCCGAGCGc -3'
miRNA:   3'- guuAGGCaCGGCCaccuaGGGCUCGU- -5'
11096 5' -57.5 NC_002794.1 + 180778 0.67 0.861626
Target:  5'- -uGUCCGggcggugGCCGG-GGAUCUCcguuuGAGCGa -3'
miRNA:   3'- guUAGGCa------CGGCCaCCUAGGG-----CUCGU- -5'
11096 5' -57.5 NC_002794.1 + 70284 0.68 0.796587
Target:  5'- ---gCCGgagagcagGCCGGgGGggCCCGGGCGc -3'
miRNA:   3'- guuaGGCa-------CGGCCaCCuaGGGCUCGU- -5'
11096 5' -57.5 NC_002794.1 + 118908 0.69 0.760454
Target:  5'- aGGUCCGUGgCGGUGGggUUC-AGCAg -3'
miRNA:   3'- gUUAGGCACgGCCACCuaGGGcUCGU- -5'
11096 5' -57.5 NC_002794.1 + 147831 0.69 0.757668
Target:  5'- ---aCCuUGCCGGUGGucgagccguugugcAUCCUGGGCGu -3'
miRNA:   3'- guuaGGcACGGCCACC--------------UAGGGCUCGU- -5'
11096 5' -57.5 NC_002794.1 + 101672 0.69 0.751131
Target:  5'- -cGUCCGaaacGCCGGcGGAgcgcgagCCCGAGCc -3'
miRNA:   3'- guUAGGCa---CGGCCaCCUa------GGGCUCGu -5'
11096 5' -57.5 NC_002794.1 + 150443 0.7 0.722599
Target:  5'- gAGUCCGgGCgGGUgcGGAUCCCGgaaGGCu -3'
miRNA:   3'- gUUAGGCaCGgCCA--CCUAGGGC---UCGu -5'
11096 5' -57.5 NC_002794.1 + 104282 0.71 0.643884
Target:  5'- ---aCCGUGCCGaacaGGAUCUCGGGCc -3'
miRNA:   3'- guuaGGCACGGCca--CCUAGGGCUCGu -5'
11096 5' -57.5 NC_002794.1 + 63318 0.72 0.564546
Target:  5'- cCGAUCCG-GCgGG-GGG-CCCGAGCGc -3'
miRNA:   3'- -GUUAGGCaCGgCCaCCUaGGGCUCGU- -5'
11096 5' -57.5 NC_002794.1 + 10496 0.73 0.554765
Target:  5'- gCAGUCUG-GCCGG-GGGcUCCGAGCGa -3'
miRNA:   3'- -GUUAGGCaCGGCCaCCUaGGGCUCGU- -5'
11096 5' -57.5 NC_002794.1 + 128764 0.75 0.44269
Target:  5'- gCGGUCCGgucaggGCCgGGUGGAcUCCCGAGa- -3'
miRNA:   3'- -GUUAGGCa-----CGG-CCACCU-AGGGCUCgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.