miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11097 3' -51.2 NC_002794.1 + 23050 0.66 0.995673
Target:  5'- uGCUGCAuccgAGUgacGCUCagccCGCCcUCGGCg -3'
miRNA:   3'- -UGAUGU----UCGa--CGAGaa--GCGGuAGUCG- -5'
11097 3' -51.2 NC_002794.1 + 93134 0.66 0.995673
Target:  5'- cACaACGcGCUGCccaagUCcgUgGCCAUCGGCa -3'
miRNA:   3'- -UGaUGUuCGACG-----AGa-AgCGGUAGUCG- -5'
11097 3' -51.2 NC_002794.1 + 123228 0.66 0.995673
Target:  5'- uCU-CGAGCgGC-CUg-GCCAUCAGCc -3'
miRNA:   3'- uGAuGUUCGaCGaGAagCGGUAGUCG- -5'
11097 3' -51.2 NC_002794.1 + 54784 0.66 0.995673
Target:  5'- -gUACAGGCggGCUCUUUGaaCGUguGCu -3'
miRNA:   3'- ugAUGUUCGa-CGAGAAGCg-GUAguCG- -5'
11097 3' -51.2 NC_002794.1 + 36449 0.66 0.994953
Target:  5'- ----gGAGCUGCUCUUUgaacgucucgaaGCCGaaccacUCGGCg -3'
miRNA:   3'- ugaugUUCGACGAGAAG------------CGGU------AGUCG- -5'
11097 3' -51.2 NC_002794.1 + 56515 0.66 0.994953
Target:  5'- --cGCGGGCgcuccggcGCUCguuccggUCGCCAUCcggAGCg -3'
miRNA:   3'- ugaUGUUCGa-------CGAGa------AGCGGUAG---UCG- -5'
11097 3' -51.2 NC_002794.1 + 70718 0.66 0.994139
Target:  5'- cACUGCGAaC-GCUCUcCGCCAccaggagCAGCg -3'
miRNA:   3'- -UGAUGUUcGaCGAGAaGCGGUa------GUCG- -5'
11097 3' -51.2 NC_002794.1 + 141532 0.66 0.994139
Target:  5'- --gGCGGGCUGC---UCGCCGaaGGCg -3'
miRNA:   3'- ugaUGUUCGACGagaAGCGGUagUCG- -5'
11097 3' -51.2 NC_002794.1 + 104790 0.66 0.994139
Target:  5'- cGCcgACAGGCggUGCUgCUUCGCgAuggccaggucggUCAGCg -3'
miRNA:   3'- -UGa-UGUUCG--ACGA-GAAGCGgU------------AGUCG- -5'
11097 3' -51.2 NC_002794.1 + 57877 0.66 0.994139
Target:  5'- cGCUGCAcAGCUGCcCgUCGCCu---GCu -3'
miRNA:   3'- -UGAUGU-UCGACGaGaAGCGGuaguCG- -5'
11097 3' -51.2 NC_002794.1 + 112648 0.66 0.994139
Target:  5'- aGCaGCAGGCagagGCUC-UCGCaggCGGCg -3'
miRNA:   3'- -UGaUGUUCGa---CGAGaAGCGguaGUCG- -5'
11097 3' -51.2 NC_002794.1 + 150825 0.66 0.993223
Target:  5'- cGCUG-GAGCUGa---UCGUCGUCAGCu -3'
miRNA:   3'- -UGAUgUUCGACgagaAGCGGUAGUCG- -5'
11097 3' -51.2 NC_002794.1 + 136482 0.66 0.993223
Target:  5'- cGCgUACAGGUcgaUGC-CUUCGCgguugGUCAGCa -3'
miRNA:   3'- -UG-AUGUUCG---ACGaGAAGCGg----UAGUCG- -5'
11097 3' -51.2 NC_002794.1 + 138110 0.66 0.993223
Target:  5'- uCUGCAggagGGCguggUGCUCgUCGCCGgucucgggCGGCg -3'
miRNA:   3'- uGAUGU----UCG----ACGAGaAGCGGUa-------GUCG- -5'
11097 3' -51.2 NC_002794.1 + 135981 0.66 0.993223
Target:  5'- gGCgcCGGGCUcCUCUUCGCUGUCcgGGUc -3'
miRNA:   3'- -UGauGUUCGAcGAGAAGCGGUAG--UCG- -5'
11097 3' -51.2 NC_002794.1 + 121998 0.66 0.992195
Target:  5'- gGCcGgGAGCUGUUCcacgUCGUCuucuUCGGCg -3'
miRNA:   3'- -UGaUgUUCGACGAGa---AGCGGu---AGUCG- -5'
11097 3' -51.2 NC_002794.1 + 189024 0.66 0.991048
Target:  5'- gGCcAgGAGCcGCUCgacCGCCAgCGGCg -3'
miRNA:   3'- -UGaUgUUCGaCGAGaa-GCGGUaGUCG- -5'
11097 3' -51.2 NC_002794.1 + 77877 0.66 0.991048
Target:  5'- uGCUGC-AGCUGCUCc-CGCCcgUAccGCc -3'
miRNA:   3'- -UGAUGuUCGACGAGaaGCGGuaGU--CG- -5'
11097 3' -51.2 NC_002794.1 + 97675 0.66 0.991048
Target:  5'- uGCUG-GAGCgGUUCggCGCCGUCAacGCg -3'
miRNA:   3'- -UGAUgUUCGaCGAGaaGCGGUAGU--CG- -5'
11097 3' -51.2 NC_002794.1 + 150761 0.66 0.991048
Target:  5'- --cGCAAGUUcgaGCUCgUCGUCGUCGGg -3'
miRNA:   3'- ugaUGUUCGA---CGAGaAGCGGUAGUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.