miRNA display CGI


Results 21 - 40 of 62 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11097 3' -51.2 NC_002794.1 + 107111 0.67 0.986297
Target:  5'- cGCUGCGAGCcGCgcuUCUUUGaCCgcgacgggaacgacGUCGGCg -3'
miRNA:   3'- -UGAUGUUCGaCG---AGAAGC-GG--------------UAGUCG- -5'
11097 3' -51.2 NC_002794.1 + 193371 0.67 0.983194
Target:  5'- uGCcACGGGCcgcGCUCcUCGCCGUCGuccGCc -3'
miRNA:   3'- -UGaUGUUCGa--CGAGaAGCGGUAGU---CG- -5'
11097 3' -51.2 NC_002794.1 + 59226 0.67 0.986795
Target:  5'- cGCgGCGcGCgaGCUCUUCGCgcugcugcccuaCGUCGGCg -3'
miRNA:   3'- -UGaUGUuCGa-CGAGAAGCG------------GUAGUCG- -5'
11097 3' -51.2 NC_002794.1 + 113400 0.67 0.986795
Target:  5'- cGCUGCAgcacccggAGCUGgUCca-GCaCGUCGGCg -3'
miRNA:   3'- -UGAUGU--------UCGACgAGaagCG-GUAGUCG- -5'
11097 3' -51.2 NC_002794.1 + 108192 0.67 0.988357
Target:  5'- gACUGCGAGCgGCgCUgcgcCGCCGcgcCGGCc -3'
miRNA:   3'- -UGAUGUUCGaCGaGAa---GCGGUa--GUCG- -5'
11097 3' -51.2 NC_002794.1 + 148338 0.67 0.988357
Target:  5'- cCUGCGuuggcAGCUGCUCUgcaacaccuUCcCCgAUCGGCa -3'
miRNA:   3'- uGAUGU-----UCGACGAGA---------AGcGG-UAGUCG- -5'
11097 3' -51.2 NC_002794.1 + 113786 0.67 0.988357
Target:  5'- aGCUccucGCGGGCgcGCUCUcgguccUCGCCuucgCGGCg -3'
miRNA:   3'- -UGA----UGUUCGa-CGAGA------AGCGGua--GUCG- -5'
11097 3' -51.2 NC_002794.1 + 92761 0.67 0.988357
Target:  5'- uCUGC-GGC-GC-CUUCGCCAgcaacUCGGCg -3'
miRNA:   3'- uGAUGuUCGaCGaGAAGCGGU-----AGUCG- -5'
11097 3' -51.2 NC_002794.1 + 123377 0.67 0.990298
Target:  5'- gGCUACAGcggucugcacacccuGCUGCUC--CGC-GUCGGCg -3'
miRNA:   3'- -UGAUGUU---------------CGACGAGaaGCGgUAGUCG- -5'
11097 3' -51.2 NC_002794.1 + 190580 0.68 0.973833
Target:  5'- --aACGGGUaGCUCUcgCGCCG-CAGCu -3'
miRNA:   3'- ugaUGUUCGaCGAGAa-GCGGUaGUCG- -5'
11097 3' -51.2 NC_002794.1 + 58593 0.68 0.973833
Target:  5'- aGCgcgGCGGGCUgGC-CUUCGCgCA-CAGCu -3'
miRNA:   3'- -UGa--UGUUCGA-CGaGAAGCG-GUaGUCG- -5'
11097 3' -51.2 NC_002794.1 + 90679 0.68 0.973833
Target:  5'- gGCcGCGuGGCUGUUCgugUGCCcgCGGCa -3'
miRNA:   3'- -UGaUGU-UCGACGAGaa-GCGGuaGUCG- -5'
11097 3' -51.2 NC_002794.1 + 59638 0.68 0.976464
Target:  5'- cACcACAAGCU-CUCcccggUCGCCA-CGGCg -3'
miRNA:   3'- -UGaUGUUCGAcGAGa----AGCGGUaGUCG- -5'
11097 3' -51.2 NC_002794.1 + 98947 0.68 0.978896
Target:  5'- --aAgGGGCUgggGCUCgugcugggCGCCGUCGGCg -3'
miRNA:   3'- ugaUgUUCGA---CGAGaa------GCGGUAGUCG- -5'
11097 3' -51.2 NC_002794.1 + 36606 0.68 0.976464
Target:  5'- --cACGAGCgcccccgagaccUGCUCgacgacgaaCGCCGUCGGCu -3'
miRNA:   3'- ugaUGUUCG------------ACGAGaa-------GCGGUAGUCG- -5'
11097 3' -51.2 NC_002794.1 + 103979 0.68 0.976464
Target:  5'- gACUGCGGGCgag-CUUCGCCGcgaAGCc -3'
miRNA:   3'- -UGAUGUUCGacgaGAAGCGGUag-UCG- -5'
11097 3' -51.2 NC_002794.1 + 106452 0.68 0.981136
Target:  5'- -gUGCAGGCggacCUCgUCGCCGugacUCGGCg -3'
miRNA:   3'- ugAUGUUCGac--GAGaAGCGGU----AGUCG- -5'
11097 3' -51.2 NC_002794.1 + 83164 0.68 0.980484
Target:  5'- aGCUGCGgacgcucucggucgAGC-GCggCUUCGCCAUCAacaacGCg -3'
miRNA:   3'- -UGAUGU--------------UCGaCGa-GAAGCGGUAGU-----CG- -5'
11097 3' -51.2 NC_002794.1 + 146150 0.68 0.981136
Target:  5'- uAUUACAAGC-GCUUgUCGCCGgccuaUCAGg -3'
miRNA:   3'- -UGAUGUUCGaCGAGaAGCGGU-----AGUCg -5'
11097 3' -51.2 NC_002794.1 + 147266 0.68 0.981136
Target:  5'- cGCU-CGAGCUGC-CgUgGCCGUcCGGCu -3'
miRNA:   3'- -UGAuGUUCGACGaGaAgCGGUA-GUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.