miRNA display CGI


Results 41 - 60 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11097 3' -51.2 NC_002794.1 + 147266 0.68 0.981136
Target:  5'- cGCU-CGAGCUGC-CgUgGCCGUcCGGCu -3'
miRNA:   3'- -UGAuGUUCGACGaGaAgCGGUA-GUCG- -5'
11097 3' -51.2 NC_002794.1 + 59354 0.69 0.957432
Target:  5'- uCUACAacGGCUGCUg--CGCCAccaCGGCg -3'
miRNA:   3'- uGAUGU--UCGACGAgaaGCGGUa--GUCG- -5'
11097 3' -51.2 NC_002794.1 + 62623 0.69 0.955077
Target:  5'- ----aGAGCUGCUCUgggcgucggaccccgUCGCCcgccUCGGCa -3'
miRNA:   3'- ugaugUUCGACGAGA---------------AGCGGu---AGUCG- -5'
11097 3' -51.2 NC_002794.1 + 189879 0.69 0.953459
Target:  5'- cGCcgACcGGCccGCUCgggccCGCCGUCAGCg -3'
miRNA:   3'- -UGa-UGuUCGa-CGAGaa---GCGGUAGUCG- -5'
11097 3' -51.2 NC_002794.1 + 187077 0.69 0.957432
Target:  5'- uGCcGCAGGCUGCUCgccaCGuggaacagcCCGUCGGUg -3'
miRNA:   3'- -UGaUGUUCGACGAGaa--GC---------GGUAGUCG- -5'
11097 3' -51.2 NC_002794.1 + 14033 0.69 0.960803
Target:  5'- cCUACuGGCUGCUggcgaucCUUaCGCCGaCGGCg -3'
miRNA:   3'- uGAUGuUCGACGA-------GAA-GCGGUaGUCG- -5'
11097 3' -51.2 NC_002794.1 + 52793 0.69 0.967942
Target:  5'- cGCU-CGAGCcGCUCgucggaCGCCggCAGCu -3'
miRNA:   3'- -UGAuGUUCGaCGAGaa----GCGGuaGUCG- -5'
11097 3' -51.2 NC_002794.1 + 53898 0.69 0.967942
Target:  5'- gACUcCGgcGGCgucCUCgUCGCCGUCGGCg -3'
miRNA:   3'- -UGAuGU--UCGac-GAGaAGCGGUAGUCG- -5'
11097 3' -51.2 NC_002794.1 + 12749 0.7 0.948809
Target:  5'- cGCUACcagGAGCUgccGCUCUUgcCGCCGccgcgcuUCGGCg -3'
miRNA:   3'- -UGAUG---UUCGA---CGAGAA--GCGGU-------AGUCG- -5'
11097 3' -51.2 NC_002794.1 + 118629 0.7 0.935108
Target:  5'- --gAUGAGCUGCUg--CGCCAgcUCGGCg -3'
miRNA:   3'- ugaUGUUCGACGAgaaGCGGU--AGUCG- -5'
11097 3' -51.2 NC_002794.1 + 105388 0.7 0.929893
Target:  5'- aGCU-CGAGCUGUUCggcCGCCGcgcggaucUCGGCc -3'
miRNA:   3'- -UGAuGUUCGACGAGaa-GCGGU--------AGUCG- -5'
11097 3' -51.2 NC_002794.1 + 92790 0.71 0.906495
Target:  5'- cGCaAgGGGCUGCUCUUcaccaaggCGCCAagugCAGCa -3'
miRNA:   3'- -UGaUgUUCGACGAGAA--------GCGGUa---GUCG- -5'
11097 3' -51.2 NC_002794.1 + 48591 0.71 0.912723
Target:  5'- --gAgGAGCgGCgcgUCGCCGUCGGCg -3'
miRNA:   3'- ugaUgUUCGaCGagaAGCGGUAGUCG- -5'
11097 3' -51.2 NC_002794.1 + 112838 0.71 0.9187
Target:  5'- -gUAC-GGCUGCUCgucggcgCGCCG-CAGCa -3'
miRNA:   3'- ugAUGuUCGACGAGaa-----GCGGUaGUCG- -5'
11097 3' -51.2 NC_002794.1 + 123548 0.71 0.924423
Target:  5'- cGCUACAGccGCggGCUgUUCGCCuUCgAGCg -3'
miRNA:   3'- -UGAUGUU--CGa-CGAgAAGCGGuAG-UCG- -5'
11097 3' -51.2 NC_002794.1 + 91087 0.73 0.831192
Target:  5'- gGCUACGggcucaaggAGCUGCUgUaCGCCGggCAGCu -3'
miRNA:   3'- -UGAUGU---------UCGACGAgAaGCGGUa-GUCG- -5'
11097 3' -51.2 NC_002794.1 + 99794 0.73 0.822487
Target:  5'- gACUACGAGCgcgcgccGCgggCgccggCGCCGUCGGCc -3'
miRNA:   3'- -UGAUGUUCGa------CGa--Gaa---GCGGUAGUCG- -5'
11097 3' -51.2 NC_002794.1 + 116795 0.74 0.804533
Target:  5'- cAUUGCGAGCcgGCUCgggCGCCGU-AGCg -3'
miRNA:   3'- -UGAUGUUCGa-CGAGaa-GCGGUAgUCG- -5'
11097 3' -51.2 NC_002794.1 + 68551 0.75 0.726859
Target:  5'- gGCcgACAAGCUGCgggugUCGCCGaCGGCg -3'
miRNA:   3'- -UGa-UGUUCGACGaga--AGCGGUaGUCG- -5'
11097 3' -51.2 NC_002794.1 + 108809 0.76 0.675164
Target:  5'- uCUACGAGgUGCaacgCUUCGgCGUCGGCg -3'
miRNA:   3'- uGAUGUUCgACGa---GAAGCgGUAGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.