Results 21 - 40 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
11097 | 3' | -51.2 | NC_002794.1 | + | 14033 | 0.69 | 0.960803 |
Target: 5'- cCUACuGGCUGCUggcgaucCUUaCGCCGaCGGCg -3' miRNA: 3'- uGAUGuUCGACGA-------GAA-GCGGUaGUCG- -5' |
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11097 | 3' | -51.2 | NC_002794.1 | + | 83164 | 0.68 | 0.980484 |
Target: 5'- aGCUGCGgacgcucucggucgAGC-GCggCUUCGCCAUCAacaacGCg -3' miRNA: 3'- -UGAUGU--------------UCGaCGa-GAAGCGGUAGU-----CG- -5' |
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11097 | 3' | -51.2 | NC_002794.1 | + | 106452 | 0.68 | 0.981136 |
Target: 5'- -gUGCAGGCggacCUCgUCGCCGugacUCGGCg -3' miRNA: 3'- ugAUGUUCGac--GAGaAGCGGU----AGUCG- -5' |
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11097 | 3' | -51.2 | NC_002794.1 | + | 103979 | 0.68 | 0.976464 |
Target: 5'- gACUGCGGGCgag-CUUCGCCGcgaAGCc -3' miRNA: 3'- -UGAUGUUCGacgaGAAGCGGUag-UCG- -5' |
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11097 | 3' | -51.2 | NC_002794.1 | + | 36606 | 0.68 | 0.976464 |
Target: 5'- --cACGAGCgcccccgagaccUGCUCgacgacgaaCGCCGUCGGCu -3' miRNA: 3'- ugaUGUUCG------------ACGAGaa-------GCGGUAGUCG- -5' |
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11097 | 3' | -51.2 | NC_002794.1 | + | 98947 | 0.68 | 0.978896 |
Target: 5'- --aAgGGGCUgggGCUCgugcugggCGCCGUCGGCg -3' miRNA: 3'- ugaUgUUCGA---CGAGaa------GCGGUAGUCG- -5' |
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11097 | 3' | -51.2 | NC_002794.1 | + | 59638 | 0.68 | 0.976464 |
Target: 5'- cACcACAAGCU-CUCcccggUCGCCA-CGGCg -3' miRNA: 3'- -UGaUGUUCGAcGAGa----AGCGGUaGUCG- -5' |
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11097 | 3' | -51.2 | NC_002794.1 | + | 90679 | 0.68 | 0.973833 |
Target: 5'- gGCcGCGuGGCUGUUCgugUGCCcgCGGCa -3' miRNA: 3'- -UGaUGU-UCGACGAGaa-GCGGuaGUCG- -5' |
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11097 | 3' | -51.2 | NC_002794.1 | + | 58593 | 0.68 | 0.973833 |
Target: 5'- aGCgcgGCGGGCUgGC-CUUCGCgCA-CAGCu -3' miRNA: 3'- -UGa--UGUUCGA-CGaGAAGCG-GUaGUCG- -5' |
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11097 | 3' | -51.2 | NC_002794.1 | + | 190580 | 0.68 | 0.973833 |
Target: 5'- --aACGGGUaGCUCUcgCGCCG-CAGCu -3' miRNA: 3'- ugaUGUUCGaCGAGAa-GCGGUaGUCG- -5' |
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11097 | 3' | -51.2 | NC_002794.1 | + | 114103 | 0.68 | 0.970994 |
Target: 5'- --gACGAGCUcGUUCagCGCCGaCAGCu -3' miRNA: 3'- ugaUGUUCGA-CGAGaaGCGGUaGUCG- -5' |
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11097 | 3' | -51.2 | NC_002794.1 | + | 146150 | 0.68 | 0.981136 |
Target: 5'- uAUUACAAGC-GCUUgUCGCCGgccuaUCAGg -3' miRNA: 3'- -UGAUGUUCGaCGAGaAGCGGU-----AGUCg -5' |
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11097 | 3' | -51.2 | NC_002794.1 | + | 147266 | 0.68 | 0.981136 |
Target: 5'- cGCU-CGAGCUGC-CgUgGCCGUcCGGCu -3' miRNA: 3'- -UGAuGUUCGACGaGaAgCGGUA-GUCG- -5' |
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11097 | 3' | -51.2 | NC_002794.1 | + | 92761 | 0.67 | 0.988357 |
Target: 5'- uCUGC-GGC-GC-CUUCGCCAgcaacUCGGCg -3' miRNA: 3'- uGAUGuUCGaCGaGAAGCGGU-----AGUCG- -5' |
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11097 | 3' | -51.2 | NC_002794.1 | + | 113786 | 0.67 | 0.988357 |
Target: 5'- aGCUccucGCGGGCgcGCUCUcgguccUCGCCuucgCGGCg -3' miRNA: 3'- -UGA----UGUUCGa-CGAGA------AGCGGua--GUCG- -5' |
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11097 | 3' | -51.2 | NC_002794.1 | + | 148338 | 0.67 | 0.988357 |
Target: 5'- cCUGCGuuggcAGCUGCUCUgcaacaccuUCcCCgAUCGGCa -3' miRNA: 3'- uGAUGU-----UCGACGAGA---------AGcGG-UAGUCG- -5' |
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11097 | 3' | -51.2 | NC_002794.1 | + | 108192 | 0.67 | 0.988357 |
Target: 5'- gACUGCGAGCgGCgCUgcgcCGCCGcgcCGGCc -3' miRNA: 3'- -UGAUGUUCGaCGaGAa---GCGGUa--GUCG- -5' |
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11097 | 3' | -51.2 | NC_002794.1 | + | 113400 | 0.67 | 0.986795 |
Target: 5'- cGCUGCAgcacccggAGCUGgUCca-GCaCGUCGGCg -3' miRNA: 3'- -UGAUGU--------UCGACgAGaagCG-GUAGUCG- -5' |
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11097 | 3' | -51.2 | NC_002794.1 | + | 59226 | 0.67 | 0.986795 |
Target: 5'- cGCgGCGcGCgaGCUCUUCGCgcugcugcccuaCGUCGGCg -3' miRNA: 3'- -UGaUGUuCGa-CGAGAAGCG------------GUAGUCG- -5' |
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11097 | 3' | -51.2 | NC_002794.1 | + | 193371 | 0.67 | 0.983194 |
Target: 5'- uGCcACGGGCcgcGCUCcUCGCCGUCGuccGCc -3' miRNA: 3'- -UGaUGUUCGa--CGAGaAGCGGUAGU---CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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