miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11097 3' -51.2 NC_002794.1 + 83164 0.68 0.980484
Target:  5'- aGCUGCGgacgcucucggucgAGC-GCggCUUCGCCAUCAacaacGCg -3'
miRNA:   3'- -UGAUGU--------------UCGaCGa-GAAGCGGUAGU-----CG- -5'
11097 3' -51.2 NC_002794.1 + 90679 0.68 0.973833
Target:  5'- gGCcGCGuGGCUGUUCgugUGCCcgCGGCa -3'
miRNA:   3'- -UGaUGU-UCGACGAGaa-GCGGuaGUCG- -5'
11097 3' -51.2 NC_002794.1 + 91087 0.73 0.831192
Target:  5'- gGCUACGggcucaaggAGCUGCUgUaCGCCGggCAGCu -3'
miRNA:   3'- -UGAUGU---------UCGACGAgAaGCGGUa-GUCG- -5'
11097 3' -51.2 NC_002794.1 + 92761 0.67 0.988357
Target:  5'- uCUGC-GGC-GC-CUUCGCCAgcaacUCGGCg -3'
miRNA:   3'- uGAUGuUCGaCGaGAAGCGGU-----AGUCG- -5'
11097 3' -51.2 NC_002794.1 + 92790 0.71 0.906495
Target:  5'- cGCaAgGGGCUGCUCUUcaccaaggCGCCAagugCAGCa -3'
miRNA:   3'- -UGaUgUUCGACGAGAA--------GCGGUa---GUCG- -5'
11097 3' -51.2 NC_002794.1 + 93134 0.66 0.995673
Target:  5'- cACaACGcGCUGCccaagUCcgUgGCCAUCGGCa -3'
miRNA:   3'- -UGaUGUuCGACG-----AGa-AgCGGUAGUCG- -5'
11097 3' -51.2 NC_002794.1 + 97675 0.66 0.991048
Target:  5'- uGCUG-GAGCgGUUCggCGCCGUCAacGCg -3'
miRNA:   3'- -UGAUgUUCGaCGAGaaGCGGUAGU--CG- -5'
11097 3' -51.2 NC_002794.1 + 98947 0.68 0.978896
Target:  5'- --aAgGGGCUgggGCUCgugcugggCGCCGUCGGCg -3'
miRNA:   3'- ugaUgUUCGA---CGAGaa------GCGGUAGUCG- -5'
11097 3' -51.2 NC_002794.1 + 99794 0.73 0.822487
Target:  5'- gACUACGAGCgcgcgccGCgggCgccggCGCCGUCGGCc -3'
miRNA:   3'- -UGAUGUUCGa------CGa--Gaa---GCGGUAGUCG- -5'
11097 3' -51.2 NC_002794.1 + 103979 0.68 0.976464
Target:  5'- gACUGCGGGCgag-CUUCGCCGcgaAGCc -3'
miRNA:   3'- -UGAUGUUCGacgaGAAGCGGUag-UCG- -5'
11097 3' -51.2 NC_002794.1 + 104790 0.66 0.994139
Target:  5'- cGCcgACAGGCggUGCUgCUUCGCgAuggccaggucggUCAGCg -3'
miRNA:   3'- -UGa-UGUUCG--ACGA-GAAGCGgU------------AGUCG- -5'
11097 3' -51.2 NC_002794.1 + 105388 0.7 0.929893
Target:  5'- aGCU-CGAGCUGUUCggcCGCCGcgcggaucUCGGCc -3'
miRNA:   3'- -UGAuGUUCGACGAGaa-GCGGU--------AGUCG- -5'
11097 3' -51.2 NC_002794.1 + 106452 0.68 0.981136
Target:  5'- -gUGCAGGCggacCUCgUCGCCGugacUCGGCg -3'
miRNA:   3'- ugAUGUUCGac--GAGaAGCGGU----AGUCG- -5'
11097 3' -51.2 NC_002794.1 + 107111 0.67 0.986297
Target:  5'- cGCUGCGAGCcGCgcuUCUUUGaCCgcgacgggaacgacGUCGGCg -3'
miRNA:   3'- -UGAUGUUCGaCG---AGAAGC-GG--------------UAGUCG- -5'
11097 3' -51.2 NC_002794.1 + 108192 0.67 0.988357
Target:  5'- gACUGCGAGCgGCgCUgcgcCGCCGcgcCGGCc -3'
miRNA:   3'- -UGAUGUUCGaCGaGAa---GCGGUa--GUCG- -5'
11097 3' -51.2 NC_002794.1 + 108809 0.76 0.675164
Target:  5'- uCUACGAGgUGCaacgCUUCGgCGUCGGCg -3'
miRNA:   3'- uGAUGUUCgACGa---GAAGCgGUAGUCG- -5'
11097 3' -51.2 NC_002794.1 + 112648 0.66 0.994139
Target:  5'- aGCaGCAGGCagagGCUC-UCGCaggCGGCg -3'
miRNA:   3'- -UGaUGUUCGa---CGAGaAGCGguaGUCG- -5'
11097 3' -51.2 NC_002794.1 + 112838 0.71 0.9187
Target:  5'- -gUAC-GGCUGCUCgucggcgCGCCG-CAGCa -3'
miRNA:   3'- ugAUGuUCGACGAGaa-----GCGGUaGUCG- -5'
11097 3' -51.2 NC_002794.1 + 113400 0.67 0.986795
Target:  5'- cGCUGCAgcacccggAGCUGgUCca-GCaCGUCGGCg -3'
miRNA:   3'- -UGAUGU--------UCGACgAGaagCG-GUAGUCG- -5'
11097 3' -51.2 NC_002794.1 + 113786 0.67 0.988357
Target:  5'- aGCUccucGCGGGCgcGCUCUcgguccUCGCCuucgCGGCg -3'
miRNA:   3'- -UGA----UGUUCGa-CGAGA------AGCGGua--GUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.