miRNA display CGI


Results 41 - 60 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11097 3' -51.2 NC_002794.1 + 114103 0.68 0.970994
Target:  5'- --gACGAGCUcGUUCagCGCCGaCAGCu -3'
miRNA:   3'- ugaUGUUCGA-CGAGaaGCGGUaGUCG- -5'
11097 3' -51.2 NC_002794.1 + 114545 0.84 0.293223
Target:  5'- aGCUgcGCGAGCUGUUCUUCGgCCAggcgCAGCg -3'
miRNA:   3'- -UGA--UGUUCGACGAGAAGC-GGUa---GUCG- -5'
11097 3' -51.2 NC_002794.1 + 116795 0.74 0.804533
Target:  5'- cAUUGCGAGCcgGCUCgggCGCCGU-AGCg -3'
miRNA:   3'- -UGAUGUUCGa-CGAGaa-GCGGUAgUCG- -5'
11097 3' -51.2 NC_002794.1 + 118629 0.7 0.935108
Target:  5'- --gAUGAGCUGCUg--CGCCAgcUCGGCg -3'
miRNA:   3'- ugaUGUUCGACGAgaaGCGGU--AGUCG- -5'
11097 3' -51.2 NC_002794.1 + 121998 0.66 0.992195
Target:  5'- gGCcGgGAGCUGUUCcacgUCGUCuucuUCGGCg -3'
miRNA:   3'- -UGaUgUUCGACGAGa---AGCGGu---AGUCG- -5'
11097 3' -51.2 NC_002794.1 + 123228 0.66 0.995673
Target:  5'- uCU-CGAGCgGC-CUg-GCCAUCAGCc -3'
miRNA:   3'- uGAuGUUCGaCGaGAagCGGUAGUCG- -5'
11097 3' -51.2 NC_002794.1 + 123377 0.67 0.990298
Target:  5'- gGCUACAGcggucugcacacccuGCUGCUC--CGC-GUCGGCg -3'
miRNA:   3'- -UGAUGUU---------------CGACGAGaaGCGgUAGUCG- -5'
11097 3' -51.2 NC_002794.1 + 123548 0.71 0.924423
Target:  5'- cGCUACAGccGCggGCUgUUCGCCuUCgAGCg -3'
miRNA:   3'- -UGAUGUU--CGa-CGAgAAGCGGuAG-UCG- -5'
11097 3' -51.2 NC_002794.1 + 135981 0.66 0.993223
Target:  5'- gGCgcCGGGCUcCUCUUCGCUGUCcgGGUc -3'
miRNA:   3'- -UGauGUUCGAcGAGAAGCGGUAG--UCG- -5'
11097 3' -51.2 NC_002794.1 + 136482 0.66 0.993223
Target:  5'- cGCgUACAGGUcgaUGC-CUUCGCgguugGUCAGCa -3'
miRNA:   3'- -UG-AUGUUCG---ACGaGAAGCGg----UAGUCG- -5'
11097 3' -51.2 NC_002794.1 + 138110 0.66 0.993223
Target:  5'- uCUGCAggagGGCguggUGCUCgUCGCCGgucucgggCGGCg -3'
miRNA:   3'- uGAUGU----UCG----ACGAGaAGCGGUa-------GUCG- -5'
11097 3' -51.2 NC_002794.1 + 141532 0.66 0.994139
Target:  5'- --gGCGGGCUGC---UCGCCGaaGGCg -3'
miRNA:   3'- ugaUGUUCGACGagaAGCGGUagUCG- -5'
11097 3' -51.2 NC_002794.1 + 146150 0.68 0.981136
Target:  5'- uAUUACAAGC-GCUUgUCGCCGgccuaUCAGg -3'
miRNA:   3'- -UGAUGUUCGaCGAGaAGCGGU-----AGUCg -5'
11097 3' -51.2 NC_002794.1 + 147266 0.68 0.981136
Target:  5'- cGCU-CGAGCUGC-CgUgGCCGUcCGGCu -3'
miRNA:   3'- -UGAuGUUCGACGaGaAgCGGUA-GUCG- -5'
11097 3' -51.2 NC_002794.1 + 148338 0.67 0.988357
Target:  5'- cCUGCGuuggcAGCUGCUCUgcaacaccuUCcCCgAUCGGCa -3'
miRNA:   3'- uGAUGU-----UCGACGAGA---------AGcGG-UAGUCG- -5'
11097 3' -51.2 NC_002794.1 + 150761 0.66 0.991048
Target:  5'- --cGCAAGUUcgaGCUCgUCGUCGUCGGg -3'
miRNA:   3'- ugaUGUUCGA---CGAGaAGCGGUAGUCg -5'
11097 3' -51.2 NC_002794.1 + 150825 0.66 0.993223
Target:  5'- cGCUG-GAGCUGa---UCGUCGUCAGCu -3'
miRNA:   3'- -UGAUgUUCGACgagaAGCGGUAGUCG- -5'
11097 3' -51.2 NC_002794.1 + 187077 0.69 0.957432
Target:  5'- uGCcGCAGGCUGCUCgccaCGuggaacagcCCGUCGGUg -3'
miRNA:   3'- -UGaUGUUCGACGAGaa--GC---------GGUAGUCG- -5'
11097 3' -51.2 NC_002794.1 + 189024 0.66 0.991048
Target:  5'- gGCcAgGAGCcGCUCgacCGCCAgCGGCg -3'
miRNA:   3'- -UGaUgUUCGaCGAGaa-GCGGUaGUCG- -5'
11097 3' -51.2 NC_002794.1 + 189879 0.69 0.953459
Target:  5'- cGCcgACcGGCccGCUCgggccCGCCGUCAGCg -3'
miRNA:   3'- -UGa-UGuUCGa-CGAGaa---GCGGUAGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.