Results 21 - 40 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11097 | 3' | -51.2 | NC_002794.1 | + | 114545 | 0.84 | 0.293223 |
Target: 5'- aGCUgcGCGAGCUGUUCUUCGgCCAggcgCAGCg -3' miRNA: 3'- -UGA--UGUUCGACGAGAAGC-GGUa---GUCG- -5' |
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11097 | 3' | -51.2 | NC_002794.1 | + | 114103 | 0.68 | 0.970994 |
Target: 5'- --gACGAGCUcGUUCagCGCCGaCAGCu -3' miRNA: 3'- ugaUGUUCGA-CGAGaaGCGGUaGUCG- -5' |
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11097 | 3' | -51.2 | NC_002794.1 | + | 113786 | 0.67 | 0.988357 |
Target: 5'- aGCUccucGCGGGCgcGCUCUcgguccUCGCCuucgCGGCg -3' miRNA: 3'- -UGA----UGUUCGa-CGAGA------AGCGGua--GUCG- -5' |
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11097 | 3' | -51.2 | NC_002794.1 | + | 113400 | 0.67 | 0.986795 |
Target: 5'- cGCUGCAgcacccggAGCUGgUCca-GCaCGUCGGCg -3' miRNA: 3'- -UGAUGU--------UCGACgAGaagCG-GUAGUCG- -5' |
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11097 | 3' | -51.2 | NC_002794.1 | + | 112838 | 0.71 | 0.9187 |
Target: 5'- -gUAC-GGCUGCUCgucggcgCGCCG-CAGCa -3' miRNA: 3'- ugAUGuUCGACGAGaa-----GCGGUaGUCG- -5' |
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11097 | 3' | -51.2 | NC_002794.1 | + | 112648 | 0.66 | 0.994139 |
Target: 5'- aGCaGCAGGCagagGCUC-UCGCaggCGGCg -3' miRNA: 3'- -UGaUGUUCGa---CGAGaAGCGguaGUCG- -5' |
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11097 | 3' | -51.2 | NC_002794.1 | + | 108809 | 0.76 | 0.675164 |
Target: 5'- uCUACGAGgUGCaacgCUUCGgCGUCGGCg -3' miRNA: 3'- uGAUGUUCgACGa---GAAGCgGUAGUCG- -5' |
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11097 | 3' | -51.2 | NC_002794.1 | + | 108192 | 0.67 | 0.988357 |
Target: 5'- gACUGCGAGCgGCgCUgcgcCGCCGcgcCGGCc -3' miRNA: 3'- -UGAUGUUCGaCGaGAa---GCGGUa--GUCG- -5' |
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11097 | 3' | -51.2 | NC_002794.1 | + | 107111 | 0.67 | 0.986297 |
Target: 5'- cGCUGCGAGCcGCgcuUCUUUGaCCgcgacgggaacgacGUCGGCg -3' miRNA: 3'- -UGAUGUUCGaCG---AGAAGC-GG--------------UAGUCG- -5' |
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11097 | 3' | -51.2 | NC_002794.1 | + | 106452 | 0.68 | 0.981136 |
Target: 5'- -gUGCAGGCggacCUCgUCGCCGugacUCGGCg -3' miRNA: 3'- ugAUGUUCGac--GAGaAGCGGU----AGUCG- -5' |
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11097 | 3' | -51.2 | NC_002794.1 | + | 105388 | 0.7 | 0.929893 |
Target: 5'- aGCU-CGAGCUGUUCggcCGCCGcgcggaucUCGGCc -3' miRNA: 3'- -UGAuGUUCGACGAGaa-GCGGU--------AGUCG- -5' |
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11097 | 3' | -51.2 | NC_002794.1 | + | 104790 | 0.66 | 0.994139 |
Target: 5'- cGCcgACAGGCggUGCUgCUUCGCgAuggccaggucggUCAGCg -3' miRNA: 3'- -UGa-UGUUCG--ACGA-GAAGCGgU------------AGUCG- -5' |
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11097 | 3' | -51.2 | NC_002794.1 | + | 103979 | 0.68 | 0.976464 |
Target: 5'- gACUGCGGGCgag-CUUCGCCGcgaAGCc -3' miRNA: 3'- -UGAUGUUCGacgaGAAGCGGUag-UCG- -5' |
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11097 | 3' | -51.2 | NC_002794.1 | + | 99794 | 0.73 | 0.822487 |
Target: 5'- gACUACGAGCgcgcgccGCgggCgccggCGCCGUCGGCc -3' miRNA: 3'- -UGAUGUUCGa------CGa--Gaa---GCGGUAGUCG- -5' |
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11097 | 3' | -51.2 | NC_002794.1 | + | 98947 | 0.68 | 0.978896 |
Target: 5'- --aAgGGGCUgggGCUCgugcugggCGCCGUCGGCg -3' miRNA: 3'- ugaUgUUCGA---CGAGaa------GCGGUAGUCG- -5' |
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11097 | 3' | -51.2 | NC_002794.1 | + | 97675 | 0.66 | 0.991048 |
Target: 5'- uGCUG-GAGCgGUUCggCGCCGUCAacGCg -3' miRNA: 3'- -UGAUgUUCGaCGAGaaGCGGUAGU--CG- -5' |
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11097 | 3' | -51.2 | NC_002794.1 | + | 93134 | 0.66 | 0.995673 |
Target: 5'- cACaACGcGCUGCccaagUCcgUgGCCAUCGGCa -3' miRNA: 3'- -UGaUGUuCGACG-----AGa-AgCGGUAGUCG- -5' |
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11097 | 3' | -51.2 | NC_002794.1 | + | 92790 | 0.71 | 0.906495 |
Target: 5'- cGCaAgGGGCUGCUCUUcaccaaggCGCCAagugCAGCa -3' miRNA: 3'- -UGaUgUUCGACGAGAA--------GCGGUa---GUCG- -5' |
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11097 | 3' | -51.2 | NC_002794.1 | + | 92761 | 0.67 | 0.988357 |
Target: 5'- uCUGC-GGC-GC-CUUCGCCAgcaacUCGGCg -3' miRNA: 3'- uGAUGuUCGaCGaGAAGCGGU-----AGUCG- -5' |
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11097 | 3' | -51.2 | NC_002794.1 | + | 91087 | 0.73 | 0.831192 |
Target: 5'- gGCUACGggcucaaggAGCUGCUgUaCGCCGggCAGCu -3' miRNA: 3'- -UGAUGU---------UCGACGAgAaGCGGUa-GUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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