miRNA display CGI


Results 41 - 60 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11097 3' -51.2 NC_002794.1 + 56515 0.66 0.994953
Target:  5'- --cGCGGGCgcuccggcGCUCguuccggUCGCCAUCcggAGCg -3'
miRNA:   3'- ugaUGUUCGa-------CGAGa------AGCGGUAG---UCG- -5'
11097 3' -51.2 NC_002794.1 + 36449 0.66 0.994953
Target:  5'- ----gGAGCUGCUCUUUgaacgucucgaaGCCGaaccacUCGGCg -3'
miRNA:   3'- ugaugUUCGACGAGAAG------------CGGU------AGUCG- -5'
11097 3' -51.2 NC_002794.1 + 54784 0.66 0.995673
Target:  5'- -gUACAGGCggGCUCUUUGaaCGUguGCu -3'
miRNA:   3'- ugAUGUUCGa-CGAGAAGCg-GUAguCG- -5'
11097 3' -51.2 NC_002794.1 + 123228 0.66 0.995673
Target:  5'- uCU-CGAGCgGC-CUg-GCCAUCAGCc -3'
miRNA:   3'- uGAuGUUCGaCGaGAagCGGUAGUCG- -5'
11097 3' -51.2 NC_002794.1 + 93134 0.66 0.995673
Target:  5'- cACaACGcGCUGCccaagUCcgUgGCCAUCGGCa -3'
miRNA:   3'- -UGaUGUuCGACG-----AGa-AgCGGUAGUCG- -5'
11097 3' -51.2 NC_002794.1 + 135981 0.66 0.993223
Target:  5'- gGCgcCGGGCUcCUCUUCGCUGUCcgGGUc -3'
miRNA:   3'- -UGauGUUCGAcGAGAAGCGGUAG--UCG- -5'
11097 3' -51.2 NC_002794.1 + 121998 0.66 0.992195
Target:  5'- gGCcGgGAGCUGUUCcacgUCGUCuucuUCGGCg -3'
miRNA:   3'- -UGaUgUUCGACGAGa---AGCGGu---AGUCG- -5'
11097 3' -51.2 NC_002794.1 + 193371 0.67 0.983194
Target:  5'- uGCcACGGGCcgcGCUCcUCGCCGUCGuccGCc -3'
miRNA:   3'- -UGaUGUUCGa--CGAGaAGCGGUAGU---CG- -5'
11097 3' -51.2 NC_002794.1 + 147266 0.68 0.981136
Target:  5'- cGCU-CGAGCUGC-CgUgGCCGUcCGGCu -3'
miRNA:   3'- -UGAuGUUCGACGaGaAgCGGUA-GUCG- -5'
11097 3' -51.2 NC_002794.1 + 59226 0.67 0.986795
Target:  5'- cGCgGCGcGCgaGCUCUUCGCgcugcugcccuaCGUCGGCg -3'
miRNA:   3'- -UGaUGUuCGa-CGAGAAGCG------------GUAGUCG- -5'
11097 3' -51.2 NC_002794.1 + 113400 0.67 0.986795
Target:  5'- cGCUGCAgcacccggAGCUGgUCca-GCaCGUCGGCg -3'
miRNA:   3'- -UGAUGU--------UCGACgAGaagCG-GUAGUCG- -5'
11097 3' -51.2 NC_002794.1 + 108192 0.67 0.988357
Target:  5'- gACUGCGAGCgGCgCUgcgcCGCCGcgcCGGCc -3'
miRNA:   3'- -UGAUGUUCGaCGaGAa---GCGGUa--GUCG- -5'
11097 3' -51.2 NC_002794.1 + 148338 0.67 0.988357
Target:  5'- cCUGCGuuggcAGCUGCUCUgcaacaccuUCcCCgAUCGGCa -3'
miRNA:   3'- uGAUGU-----UCGACGAGA---------AGcGG-UAGUCG- -5'
11097 3' -51.2 NC_002794.1 + 113786 0.67 0.988357
Target:  5'- aGCUccucGCGGGCgcGCUCUcgguccUCGCCuucgCGGCg -3'
miRNA:   3'- -UGA----UGUUCGa-CGAGA------AGCGGua--GUCG- -5'
11097 3' -51.2 NC_002794.1 + 92761 0.67 0.988357
Target:  5'- uCUGC-GGC-GC-CUUCGCCAgcaacUCGGCg -3'
miRNA:   3'- uGAUGuUCGaCGaGAAGCGGU-----AGUCG- -5'
11097 3' -51.2 NC_002794.1 + 123377 0.67 0.990298
Target:  5'- gGCUACAGcggucugcacacccuGCUGCUC--CGC-GUCGGCg -3'
miRNA:   3'- -UGAUGUU---------------CGACGAGaaGCGgUAGUCG- -5'
11097 3' -51.2 NC_002794.1 + 150761 0.66 0.991048
Target:  5'- --cGCAAGUUcgaGCUCgUCGUCGUCGGg -3'
miRNA:   3'- ugaUGUUCGA---CGAGaAGCGGUAGUCg -5'
11097 3' -51.2 NC_002794.1 + 97675 0.66 0.991048
Target:  5'- uGCUG-GAGCgGUUCggCGCCGUCAacGCg -3'
miRNA:   3'- -UGAUgUUCGaCGAGaaGCGGUAGU--CG- -5'
11097 3' -51.2 NC_002794.1 + 77877 0.66 0.991048
Target:  5'- uGCUGC-AGCUGCUCc-CGCCcgUAccGCc -3'
miRNA:   3'- -UGAUGuUCGACGAGaaGCGGuaGU--CG- -5'
11097 3' -51.2 NC_002794.1 + 189024 0.66 0.991048
Target:  5'- gGCcAgGAGCcGCUCgacCGCCAgCGGCg -3'
miRNA:   3'- -UGaUgUUCGaCGAGaa-GCGGUaGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.