miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11097 5' -63.5 NC_002794.1 + 148205 0.66 0.674041
Target:  5'- gGCG-CCGGCGC-GCGCUCGaucGGucuccGGu -3'
miRNA:   3'- -CGCgGGCCGCGaCGCGAGCga-CCu----CC- -5'
11097 5' -63.5 NC_002794.1 + 108078 0.66 0.674041
Target:  5'- cGUGCCUGGCGUUGUuacGCUCuCgGGAu- -3'
miRNA:   3'- -CGCGGGCCGCGACG---CGAGcGaCCUcc -5'
11097 5' -63.5 NC_002794.1 + 116865 0.66 0.674041
Target:  5'- gGCGgCC-GUGUcGCGCUCGUcagGGGGGc -3'
miRNA:   3'- -CGCgGGcCGCGaCGCGAGCGa--CCUCC- -5'
11097 5' -63.5 NC_002794.1 + 20623 0.66 0.674041
Target:  5'- aUGCCCGGCuccgGCUGC-CUCgacgGCUGGugcgagcaAGGg -3'
miRNA:   3'- cGCGGGCCG----CGACGcGAG----CGACC--------UCC- -5'
11097 5' -63.5 NC_002794.1 + 191192 0.66 0.673093
Target:  5'- uCGCCCGGCcgcccgcccGCU-CGCUCGCUcgcucucucgcccGaGAGGc -3'
miRNA:   3'- cGCGGGCCG---------CGAcGCGAGCGA-------------C-CUCC- -5'
11097 5' -63.5 NC_002794.1 + 56510 0.66 0.673093
Target:  5'- -gGCCCcgcgGGCGCUccgGCGCUCGUUccggucgccauccGGAGc -3'
miRNA:   3'- cgCGGG----CCGCGA---CGCGAGCGA-------------CCUCc -5'
11097 5' -63.5 NC_002794.1 + 146835 0.66 0.664556
Target:  5'- uCGUuuGGCGCgagagucggUGCGCgUCGUucgcguucgggUGGGGGg -3'
miRNA:   3'- cGCGggCCGCG---------ACGCG-AGCG-----------ACCUCC- -5'
11097 5' -63.5 NC_002794.1 + 122479 0.66 0.664556
Target:  5'- uCGCCCaGGCcggGCUgaacgagucgGCGC-CGCaGGAGGg -3'
miRNA:   3'- cGCGGG-CCG---CGA----------CGCGaGCGaCCUCC- -5'
11097 5' -63.5 NC_002794.1 + 107943 0.66 0.664556
Target:  5'- aGCGgCUGGCucGCUacccGCGCgagaaGCUGGAGa -3'
miRNA:   3'- -CGCgGGCCG--CGA----CGCGag---CGACCUCc -5'
11097 5' -63.5 NC_002794.1 + 37740 0.66 0.664556
Target:  5'- gGCGCcgCCGGCgGCgGCGCggcggCGCcGGcGGGa -3'
miRNA:   3'- -CGCG--GGCCG-CGaCGCGa----GCGaCC-UCC- -5'
11097 5' -63.5 NC_002794.1 + 114973 0.66 0.655049
Target:  5'- aGCaGCUCGGCGCagGCGUccuguaguUCGC-GGAGc -3'
miRNA:   3'- -CG-CGGGCCGCGa-CGCG--------AGCGaCCUCc -5'
11097 5' -63.5 NC_002794.1 + 150090 0.66 0.655049
Target:  5'- uGCGCUgGGCGgaGCGUgagGCcGGAGc -3'
miRNA:   3'- -CGCGGgCCGCgaCGCGag-CGaCCUCc -5'
11097 5' -63.5 NC_002794.1 + 552 0.66 0.655049
Target:  5'- uUGCCCGGC-CUcgGCGCggCGgUGGcAGGu -3'
miRNA:   3'- cGCGGGCCGcGA--CGCGa-GCgACC-UCC- -5'
11097 5' -63.5 NC_002794.1 + 39697 0.66 0.645526
Target:  5'- uCGCCCGGCaccGCcgGCGCUaccgacCGCUGcagcaucacgacGAGGa -3'
miRNA:   3'- cGCGGGCCG---CGa-CGCGA------GCGAC------------CUCC- -5'
11097 5' -63.5 NC_002794.1 + 126112 0.66 0.645526
Target:  5'- -gGCCCugGGCGCcGCGCUCGuCUGcgccGGu -3'
miRNA:   3'- cgCGGG--CCGCGaCGCGAGC-GACcu--CC- -5'
11097 5' -63.5 NC_002794.1 + 126273 0.66 0.645526
Target:  5'- -gGCUggCGGCGCUGgGCUUGCUGu--- -3'
miRNA:   3'- cgCGG--GCCGCGACgCGAGCGACcucc -5'
11097 5' -63.5 NC_002794.1 + 136705 0.66 0.645526
Target:  5'- aGCGCCCGGUGCagGCGCcggucccggCGUccaGGcGGu -3'
miRNA:   3'- -CGCGGGCCGCGa-CGCGa--------GCGa--CCuCC- -5'
11097 5' -63.5 NC_002794.1 + 56584 0.66 0.635994
Target:  5'- cGCGCCgCGGCGCc-CGC-CGCcggccuccucaUGGAGa -3'
miRNA:   3'- -CGCGG-GCCGCGacGCGaGCG-----------ACCUCc -5'
11097 5' -63.5 NC_002794.1 + 128570 0.66 0.635994
Target:  5'- cGCGCUCGGCGUcgUGUacacGUUCGCgacccuGAGGc -3'
miRNA:   3'- -CGCGGGCCGCG--ACG----CGAGCGac----CUCC- -5'
11097 5' -63.5 NC_002794.1 + 38175 0.66 0.635994
Target:  5'- uGCGCUCGGCGaCgaagGCGUUC-CUGGu-- -3'
miRNA:   3'- -CGCGGGCCGC-Ga---CGCGAGcGACCucc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.