Results 21 - 40 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
11097 | 5' | -63.5 | NC_002794.1 | + | 122479 | 0.66 | 0.664556 |
Target: 5'- uCGCCCaGGCcggGCUgaacgagucgGCGC-CGCaGGAGGg -3' miRNA: 3'- cGCGGG-CCG---CGA----------CGCGaGCGaCCUCC- -5' |
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11097 | 5' | -63.5 | NC_002794.1 | + | 107943 | 0.66 | 0.664556 |
Target: 5'- aGCGgCUGGCucGCUacccGCGCgagaaGCUGGAGa -3' miRNA: 3'- -CGCgGGCCG--CGA----CGCGag---CGACCUCc -5' |
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11097 | 5' | -63.5 | NC_002794.1 | + | 37740 | 0.66 | 0.664556 |
Target: 5'- gGCGCcgCCGGCgGCgGCGCggcggCGCcGGcGGGa -3' miRNA: 3'- -CGCG--GGCCG-CGaCGCGa----GCGaCC-UCC- -5' |
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11097 | 5' | -63.5 | NC_002794.1 | + | 135976 | 0.67 | 0.578963 |
Target: 5'- -aGCCCGGCGCcGgGCuccucuUCGCUGuccGGGu -3' miRNA: 3'- cgCGGGCCGCGaCgCG------AGCGACc--UCC- -5' |
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11097 | 5' | -63.5 | NC_002794.1 | + | 11983 | 0.67 | 0.578963 |
Target: 5'- gGCGUCCGGCgGCUGguUGCU-GCUGuGuGGa -3' miRNA: 3'- -CGCGGGCCG-CGAC--GCGAgCGAC-CuCC- -5' |
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11097 | 5' | -63.5 | NC_002794.1 | + | 18915 | 0.67 | 0.578963 |
Target: 5'- gGCGCCCggacuGGCGCUGgaucgGUUCGUgacGGAGa -3' miRNA: 3'- -CGCGGG-----CCGCGACg----CGAGCGa--CCUCc -5' |
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11097 | 5' | -63.5 | NC_002794.1 | + | 180838 | 0.67 | 0.573305 |
Target: 5'- -aGCCCGGCGUcaccgucgucuacgGC-CUCGUcGGAGGc -3' miRNA: 3'- cgCGGGCCGCGa-------------CGcGAGCGaCCUCC- -5' |
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11097 | 5' | -63.5 | NC_002794.1 | + | 148134 | 0.67 | 0.578019 |
Target: 5'- gGCGCggggccgCCGGgGCgaggGCGgUCGCgacggaaGGAGGg -3' miRNA: 3'- -CGCG-------GGCCgCGa---CGCgAGCGa------CCUCC- -5' |
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11097 | 5' | -63.5 | NC_002794.1 | + | 17436 | 0.67 | 0.56954 |
Target: 5'- cGCGCcgCCGGCGCUcGgGCcCGCgaccGAGGu -3' miRNA: 3'- -CGCG--GGCCGCGA-CgCGaGCGac--CUCC- -5' |
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11097 | 5' | -63.5 | NC_002794.1 | + | 8463 | 0.67 | 0.587471 |
Target: 5'- cUGaCCCGGCuguuccggaccacGCaaCGCUCGCUGGAGu -3' miRNA: 3'- cGC-GGGCCG-------------CGacGCGAGCGACCUCc -5' |
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11097 | 5' | -63.5 | NC_002794.1 | + | 106418 | 0.67 | 0.588418 |
Target: 5'- gGCGCCgGG-GCUcaugGCGCU-GUUGGAGa -3' miRNA: 3'- -CGCGGgCCgCGA----CGCGAgCGACCUCc -5' |
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11097 | 5' | -63.5 | NC_002794.1 | + | 126352 | 0.67 | 0.616928 |
Target: 5'- cGUGuCCCGGCuccgauuucgccGCUGCGUgggCGCcGGGGc -3' miRNA: 3'- -CGC-GGGCCG------------CGACGCGa--GCGaCCUCc -5' |
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11097 | 5' | -63.5 | NC_002794.1 | + | 19527 | 0.67 | 0.607406 |
Target: 5'- aGCG-CCGGCGCgGCGCggccCGCcGGugucGGa -3' miRNA: 3'- -CGCgGGCCGCGaCGCGa---GCGaCCu---CC- -5' |
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11097 | 5' | -63.5 | NC_002794.1 | + | 33674 | 0.67 | 0.597901 |
Target: 5'- cGCGCU---CGCUGCGCUCGCUGc--- -3' miRNA: 3'- -CGCGGgccGCGACGCGAGCGACcucc -5' |
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11097 | 5' | -63.5 | NC_002794.1 | + | 42851 | 0.67 | 0.597901 |
Target: 5'- aGCGCCCGGCcucgGCguaCGCUUuCUGGAa- -3' miRNA: 3'- -CGCGGGCCG----CGac-GCGAGcGACCUcc -5' |
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11097 | 5' | -63.5 | NC_002794.1 | + | 102644 | 0.67 | 0.597901 |
Target: 5'- cCGgCUGGCgGC-GCGCUCGgaGGAGc -3' miRNA: 3'- cGCgGGCCG-CGaCGCGAGCgaCCUCc -5' |
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11097 | 5' | -63.5 | NC_002794.1 | + | 119737 | 0.67 | 0.588418 |
Target: 5'- gGCGCUCGGCGUguuUGCGCa-GCUccGGAccaGGu -3' miRNA: 3'- -CGCGGGCCGCG---ACGCGagCGA--CCU---CC- -5' |
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11097 | 5' | -63.5 | NC_002794.1 | + | 14465 | 0.68 | 0.550814 |
Target: 5'- cGUGUCgagCGGCGCgccGCGCUCGCUGu--- -3' miRNA: 3'- -CGCGG---GCCGCGa--CGCGAGCGACcucc -5' |
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11097 | 5' | -63.5 | NC_002794.1 | + | 140485 | 0.68 | 0.550814 |
Target: 5'- gGCGCCCgauuaccgGGCGCUGUaccGCgacuuccacCGCUGGcGGc -3' miRNA: 3'- -CGCGGG--------CCGCGACG---CGa--------GCGACCuCC- -5' |
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11097 | 5' | -63.5 | NC_002794.1 | + | 58542 | 0.68 | 0.541522 |
Target: 5'- uCGCCgCGGCGCgcGCGCU-GCUGGc-- -3' miRNA: 3'- cGCGG-GCCGCGa-CGCGAgCGACCucc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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