Results 61 - 80 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11097 | 5' | -63.5 | NC_002794.1 | + | 66959 | 0.7 | 0.435256 |
Target: 5'- -aGgCCGGCGaguCGCUCGCcGGGGGa -3' miRNA: 3'- cgCgGGCCGCgacGCGAGCGaCCUCC- -5' |
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11097 | 5' | -63.5 | NC_002794.1 | + | 91143 | 0.7 | 0.42694 |
Target: 5'- gGCGCggaCGGUGCUGCuGggCGCcgUGGAGGc -3' miRNA: 3'- -CGCGg--GCCGCGACG-CgaGCG--ACCUCC- -5' |
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11097 | 5' | -63.5 | NC_002794.1 | + | 113169 | 0.7 | 0.435256 |
Target: 5'- cGCGCgCgGGCgGCgGCGgUCGC-GGAGGc -3' miRNA: 3'- -CGCG-GgCCG-CGaCGCgAGCGaCCUCC- -5' |
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11097 | 5' | -63.5 | NC_002794.1 | + | 91239 | 0.7 | 0.443666 |
Target: 5'- gGCGgCCGucGgGCUGCGCUCGC-GGAc- -3' miRNA: 3'- -CGCgGGC--CgCGACGCGAGCGaCCUcc -5' |
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11097 | 5' | -63.5 | NC_002794.1 | + | 21708 | 0.71 | 0.39464 |
Target: 5'- gGCGUCCacgGGCGCUGCG-UCGCgaucGcGAGGc -3' miRNA: 3'- -CGCGGG---CCGCGACGCgAGCGa---C-CUCC- -5' |
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11097 | 5' | -63.5 | NC_002794.1 | + | 30735 | 0.71 | 0.39464 |
Target: 5'- cCGCCCGaacuggccGCgGCUG-GCgCGCUGGAGGa -3' miRNA: 3'- cGCGGGC--------CG-CGACgCGaGCGACCUCC- -5' |
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11097 | 5' | -63.5 | NC_002794.1 | + | 59368 | 0.71 | 0.379094 |
Target: 5'- uGCGCCaccaCGGCGCcGCGCcUGCUGcGGGc -3' miRNA: 3'- -CGCGG----GCCGCGaCGCGaGCGACcUCC- -5' |
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11097 | 5' | -63.5 | NC_002794.1 | + | 119249 | 0.71 | 0.349257 |
Target: 5'- cGUGUCCucggcggcGGCGUaGUGCUCGUacUGGAGGg -3' miRNA: 3'- -CGCGGG--------CCGCGaCGCGAGCG--ACCUCC- -5' |
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11097 | 5' | -63.5 | NC_002794.1 | + | 115881 | 0.71 | 0.379094 |
Target: 5'- gGCGUCCGGgGCgucCGCggagCGCgGGGGGu -3' miRNA: 3'- -CGCGGGCCgCGac-GCGa---GCGaCCUCC- -5' |
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11097 | 5' | -63.5 | NC_002794.1 | + | 70676 | 0.72 | 0.328001 |
Target: 5'- cCGCCgCGGCGgugacgucCUGuCGC-CGCUGGGGGu -3' miRNA: 3'- cGCGG-GCCGC--------GAC-GCGaGCGACCUCC- -5' |
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11097 | 5' | -63.5 | NC_002794.1 | + | 67203 | 0.72 | 0.334979 |
Target: 5'- aGCGUCCgGGCGgUGCGCUCgGCgccgGGcGGc -3' miRNA: 3'- -CGCGGG-CCGCgACGCGAG-CGa---CCuCC- -5' |
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11097 | 5' | -63.5 | NC_002794.1 | + | 126303 | 0.72 | 0.3378 |
Target: 5'- cGCGCCUGGCGgUGCagcggagcgugacccGCUCGCUGa--- -3' miRNA: 3'- -CGCGGGCCGCgACG---------------CGAGCGACcucc -5' |
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11097 | 5' | -63.5 | NC_002794.1 | + | 107210 | 0.72 | 0.342064 |
Target: 5'- uCGCCCGGCGCcGCcggGCggcgCGCgacGGGGGc -3' miRNA: 3'- cGCGGGCCGCGaCG---CGa---GCGa--CCUCC- -5' |
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11097 | 5' | -63.5 | NC_002794.1 | + | 116081 | 0.73 | 0.294736 |
Target: 5'- aGCGCUCGGCGCgGCGgUCGUcgccGGGGu -3' miRNA: 3'- -CGCGGGCCGCGaCGCgAGCGa---CCUCc -5' |
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11097 | 5' | -63.5 | NC_002794.1 | + | 100326 | 0.74 | 0.23092 |
Target: 5'- cGCGgCCGGCGCacgGCcgGCUCucgaccgccgaGCUGGAGGu -3' miRNA: 3'- -CGCgGGCCGCGa--CG--CGAG-----------CGACCUCC- -5' |
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11097 | 5' | -63.5 | NC_002794.1 | + | 125834 | 0.74 | 0.252666 |
Target: 5'- gGCGCCCuGCuGCUGCGCUgccgGCUGGAc- -3' miRNA: 3'- -CGCGGGcCG-CGACGCGAg---CGACCUcc -5' |
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11097 | 5' | -63.5 | NC_002794.1 | + | 66826 | 0.74 | 0.24159 |
Target: 5'- gGCGCCCGGCGCgacuccggGCGCcgccgucggCGCgGcGAGGc -3' miRNA: 3'- -CGCGGGCCGCGa-------CGCGa--------GCGaC-CUCC- -5' |
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11097 | 5' | -63.5 | NC_002794.1 | + | 101788 | 0.74 | 0.252666 |
Target: 5'- cUGUCCGaGUGCUGCGC-CGCUGGuuGGc -3' miRNA: 3'- cGCGGGC-CGCGACGCGaGCGACCu-CC- -5' |
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11097 | 5' | -63.5 | NC_002794.1 | + | 55809 | 0.74 | 0.264158 |
Target: 5'- aGCGCCgGGCGCggGCGCgCGCUGauGGc -3' miRNA: 3'- -CGCGGgCCGCGa-CGCGaGCGACcuCC- -5' |
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11097 | 5' | -63.5 | NC_002794.1 | + | 149277 | 0.75 | 0.20598 |
Target: 5'- cCGCCggCGGCGCgGCgGCUCGCUcacGGGGGg -3' miRNA: 3'- cGCGG--GCCGCGaCG-CGAGCGA---CCUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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