miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11097 5' -63.5 NC_002794.1 + 35544 0.75 0.220652
Target:  5'- cGCGagaCCCGGCGCUcGCGCgcgCGCgUGGuGGc -3'
miRNA:   3'- -CGC---GGGCCGCGA-CGCGa--GCG-ACCuCC- -5'
11097 5' -63.5 NC_002794.1 + 187605 0.75 0.225736
Target:  5'- aCGCCCGGCGUcGCccagaGC-CGCUGGAGa -3'
miRNA:   3'- cGCGGGCCGCGaCG-----CGaGCGACCUCc -5'
11097 5' -63.5 NC_002794.1 + 149277 0.75 0.20598
Target:  5'- cCGCCggCGGCGCgGCgGCUCGCUcacGGGGGg -3'
miRNA:   3'- cGCGG--GCCGCGaCG-CGAGCGA---CCUCC- -5'
11097 5' -63.5 NC_002794.1 + 66826 0.74 0.24159
Target:  5'- gGCGCCCGGCGCgacuccggGCGCcgccgucggCGCgGcGAGGc -3'
miRNA:   3'- -CGCGGGCCGCGa-------CGCGa--------GCGaC-CUCC- -5'
11097 5' -63.5 NC_002794.1 + 55809 0.74 0.264158
Target:  5'- aGCGCCgGGCGCggGCGCgCGCUGauGGc -3'
miRNA:   3'- -CGCGGgCCGCGa-CGCGaGCGACcuCC- -5'
11097 5' -63.5 NC_002794.1 + 100326 0.74 0.23092
Target:  5'- cGCGgCCGGCGCacgGCcgGCUCucgaccgccgaGCUGGAGGu -3'
miRNA:   3'- -CGCgGGCCGCGa--CG--CGAG-----------CGACCUCC- -5'
11097 5' -63.5 NC_002794.1 + 101788 0.74 0.252666
Target:  5'- cUGUCCGaGUGCUGCGC-CGCUGGuuGGc -3'
miRNA:   3'- cGCGGGC-CGCGACGCGaGCGACCu-CC- -5'
11097 5' -63.5 NC_002794.1 + 125834 0.74 0.252666
Target:  5'- gGCGCCCuGCuGCUGCGCUgccgGCUGGAc- -3'
miRNA:   3'- -CGCGGGcCG-CGACGCGAg---CGACCUcc -5'
11097 5' -63.5 NC_002794.1 + 116081 0.73 0.294736
Target:  5'- aGCGCUCGGCGCgGCGgUCGUcgccGGGGu -3'
miRNA:   3'- -CGCGGGCCGCGaCGCgAGCGa---CCUCc -5'
11097 5' -63.5 NC_002794.1 + 126303 0.72 0.3378
Target:  5'- cGCGCCUGGCGgUGCagcggagcgugacccGCUCGCUGa--- -3'
miRNA:   3'- -CGCGGGCCGCgACG---------------CGAGCGACcucc -5'
11097 5' -63.5 NC_002794.1 + 67203 0.72 0.334979
Target:  5'- aGCGUCCgGGCGgUGCGCUCgGCgccgGGcGGc -3'
miRNA:   3'- -CGCGGG-CCGCgACGCGAG-CGa---CCuCC- -5'
11097 5' -63.5 NC_002794.1 + 107210 0.72 0.342064
Target:  5'- uCGCCCGGCGCcGCcggGCggcgCGCgacGGGGGc -3'
miRNA:   3'- cGCGGGCCGCGaCG---CGa---GCGa--CCUCC- -5'
11097 5' -63.5 NC_002794.1 + 70676 0.72 0.328001
Target:  5'- cCGCCgCGGCGgugacgucCUGuCGC-CGCUGGGGGu -3'
miRNA:   3'- cGCGG-GCCGC--------GAC-GCGaGCGACCUCC- -5'
11097 5' -63.5 NC_002794.1 + 119249 0.71 0.349257
Target:  5'- cGUGUCCucggcggcGGCGUaGUGCUCGUacUGGAGGg -3'
miRNA:   3'- -CGCGGG--------CCGCGaCGCGAGCG--ACCUCC- -5'
11097 5' -63.5 NC_002794.1 + 30735 0.71 0.39464
Target:  5'- cCGCCCGaacuggccGCgGCUG-GCgCGCUGGAGGa -3'
miRNA:   3'- cGCGGGC--------CG-CGACgCGaGCGACCUCC- -5'
11097 5' -63.5 NC_002794.1 + 115881 0.71 0.379094
Target:  5'- gGCGUCCGGgGCgucCGCggagCGCgGGGGGu -3'
miRNA:   3'- -CGCGGGCCgCGac-GCGa---GCGaCCUCC- -5'
11097 5' -63.5 NC_002794.1 + 59368 0.71 0.379094
Target:  5'- uGCGCCaccaCGGCGCcGCGCcUGCUGcGGGc -3'
miRNA:   3'- -CGCGG----GCCGCGaCGCGaGCGACcUCC- -5'
11097 5' -63.5 NC_002794.1 + 21708 0.71 0.39464
Target:  5'- gGCGUCCacgGGCGCUGCG-UCGCgaucGcGAGGc -3'
miRNA:   3'- -CGCGGG---CCGCGACGCgAGCGa---C-CUCC- -5'
11097 5' -63.5 NC_002794.1 + 113169 0.7 0.435256
Target:  5'- cGCGCgCgGGCgGCgGCGgUCGC-GGAGGc -3'
miRNA:   3'- -CGCG-GgCCG-CGaCGCgAGCGaCCUCC- -5'
11097 5' -63.5 NC_002794.1 + 91239 0.7 0.443666
Target:  5'- gGCGgCCGucGgGCUGCGCUCGC-GGAc- -3'
miRNA:   3'- -CGCgGGC--CgCGACGCGAGCGaCCUcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.