miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11097 5' -63.5 NC_002794.1 + 96182 0.66 0.63504
Target:  5'- gGUGCaCCGGCGcCUGCcggccgagucccuGCcggCGCUGGgucAGGa -3'
miRNA:   3'- -CGCG-GGCCGC-GACG-------------CGa--GCGACC---UCC- -5'
11097 5' -63.5 NC_002794.1 + 113294 0.66 0.626459
Target:  5'- cUGCUCGGCGCaGCGCUCGUc----- -3'
miRNA:   3'- cGCGGGCCGCGaCGCGAGCGaccucc -5'
11097 5' -63.5 NC_002794.1 + 101268 0.66 0.626459
Target:  5'- cGCcCCCGGCGCcggugGCgGCg-GCggGGAGGa -3'
miRNA:   3'- -CGcGGGCCGCGa----CG-CGagCGa-CCUCC- -5'
11097 5' -63.5 NC_002794.1 + 126352 0.67 0.616928
Target:  5'- cGUGuCCCGGCuccgauuucgccGCUGCGUgggCGCcGGGGc -3'
miRNA:   3'- -CGC-GGGCCG------------CGACGCGa--GCGaCCUCc -5'
11097 5' -63.5 NC_002794.1 + 19527 0.67 0.607406
Target:  5'- aGCG-CCGGCGCgGCGCggccCGCcGGugucGGa -3'
miRNA:   3'- -CGCgGGCCGCGaCGCGa---GCGaCCu---CC- -5'
11097 5' -63.5 NC_002794.1 + 102644 0.67 0.597901
Target:  5'- cCGgCUGGCgGC-GCGCUCGgaGGAGc -3'
miRNA:   3'- cGCgGGCCG-CGaCGCGAGCgaCCUCc -5'
11097 5' -63.5 NC_002794.1 + 42851 0.67 0.597901
Target:  5'- aGCGCCCGGCcucgGCguaCGCUUuCUGGAa- -3'
miRNA:   3'- -CGCGGGCCG----CGac-GCGAGcGACCUcc -5'
11097 5' -63.5 NC_002794.1 + 33674 0.67 0.597901
Target:  5'- cGCGCU---CGCUGCGCUCGCUGc--- -3'
miRNA:   3'- -CGCGGgccGCGACGCGAGCGACcucc -5'
11097 5' -63.5 NC_002794.1 + 119737 0.67 0.588418
Target:  5'- gGCGCUCGGCGUguuUGCGCa-GCUccGGAccaGGu -3'
miRNA:   3'- -CGCGGGCCGCG---ACGCGagCGA--CCU---CC- -5'
11097 5' -63.5 NC_002794.1 + 106418 0.67 0.588418
Target:  5'- gGCGCCgGG-GCUcaugGCGCU-GUUGGAGa -3'
miRNA:   3'- -CGCGGgCCgCGA----CGCGAgCGACCUCc -5'
11097 5' -63.5 NC_002794.1 + 8463 0.67 0.587471
Target:  5'- cUGaCCCGGCuguuccggaccacGCaaCGCUCGCUGGAGu -3'
miRNA:   3'- cGC-GGGCCG-------------CGacGCGAGCGACCUCc -5'
11097 5' -63.5 NC_002794.1 + 18915 0.67 0.578963
Target:  5'- gGCGCCCggacuGGCGCUGgaucgGUUCGUgacGGAGa -3'
miRNA:   3'- -CGCGGG-----CCGCGACg----CGAGCGa--CCUCc -5'
11097 5' -63.5 NC_002794.1 + 11983 0.67 0.578963
Target:  5'- gGCGUCCGGCgGCUGguUGCU-GCUGuGuGGa -3'
miRNA:   3'- -CGCGGGCCG-CGAC--GCGAgCGAC-CuCC- -5'
11097 5' -63.5 NC_002794.1 + 135976 0.67 0.578963
Target:  5'- -aGCCCGGCGCcGgGCuccucuUCGCUGuccGGGu -3'
miRNA:   3'- cgCGGGCCGCGaCgCG------AGCGACc--UCC- -5'
11097 5' -63.5 NC_002794.1 + 148134 0.67 0.578019
Target:  5'- gGCGCggggccgCCGGgGCgaggGCGgUCGCgacggaaGGAGGg -3'
miRNA:   3'- -CGCG-------GGCCgCGa---CGCgAGCGa------CCUCC- -5'
11097 5' -63.5 NC_002794.1 + 180838 0.67 0.573305
Target:  5'- -aGCCCGGCGUcaccgucgucuacgGC-CUCGUcGGAGGc -3'
miRNA:   3'- cgCGGGCCGCGa-------------CGcGAGCGaCCUCC- -5'
11097 5' -63.5 NC_002794.1 + 17436 0.67 0.56954
Target:  5'- cGCGCcgCCGGCGCUcGgGCcCGCgaccGAGGu -3'
miRNA:   3'- -CGCG--GGCCGCGA-CgCGaGCGac--CUCC- -5'
11097 5' -63.5 NC_002794.1 + 185192 0.68 0.550814
Target:  5'- cGCGgUCGGCGCggucaucGCgGCUCGCgccgcGGAGa -3'
miRNA:   3'- -CGCgGGCCGCGa------CG-CGAGCGa----CCUCc -5'
11097 5' -63.5 NC_002794.1 + 14465 0.68 0.550814
Target:  5'- cGUGUCgagCGGCGCgccGCGCUCGCUGu--- -3'
miRNA:   3'- -CGCGG---GCCGCGa--CGCGAGCGACcucc -5'
11097 5' -63.5 NC_002794.1 + 140485 0.68 0.550814
Target:  5'- gGCGCCCgauuaccgGGCGCUGUaccGCgacuuccacCGCUGGcGGc -3'
miRNA:   3'- -CGCGGG--------CCGCGACG---CGa--------GCGACCuCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.