miRNA display CGI


Results 41 - 60 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11097 5' -63.5 NC_002794.1 + 62995 0.68 0.548952
Target:  5'- gGCGCCUGGCacccccgcacgugGCUggagcugGUGCUCGCcugcgcgcaGGAGGa -3'
miRNA:   3'- -CGCGGGCCG-------------CGA-------CGCGAGCGa--------CCUCC- -5'
11097 5' -63.5 NC_002794.1 + 58542 0.68 0.541522
Target:  5'- uCGCCgCGGCGCgcGCGCU-GCUGGc-- -3'
miRNA:   3'- cGCGG-GCCGCGa-CGCGAgCGACCucc -5'
11097 5' -63.5 NC_002794.1 + 58370 0.68 0.541522
Target:  5'- cCGCCCgacuuccaggaGGCGCgcggGCGCcagcUGCUGGAGc -3'
miRNA:   3'- cGCGGG-----------CCGCGa---CGCGa---GCGACCUCc -5'
11097 5' -63.5 NC_002794.1 + 95781 0.68 0.523099
Target:  5'- gGCGgCCGGgGCgagagGCGCg-GC-GGAGGa -3'
miRNA:   3'- -CGCgGGCCgCGa----CGCGagCGaCCUCC- -5'
11097 5' -63.5 NC_002794.1 + 58085 0.68 0.523099
Target:  5'- gGCgGCCCGGCGCccGCGCUcgacCGCUGc--- -3'
miRNA:   3'- -CG-CGGGCCGCGa-CGCGA----GCGACcucc -5'
11097 5' -63.5 NC_002794.1 + 82203 0.68 0.513978
Target:  5'- aGCGCCCGGCacuccuuCUGCGCUCGagcccGGccGa -3'
miRNA:   3'- -CGCGGGCCGc------GACGCGAGCga---CCucC- -5'
11097 5' -63.5 NC_002794.1 + 79043 0.68 0.513978
Target:  5'- -gGCCCGGcCGCUcccGCGCUCGCUc---- -3'
miRNA:   3'- cgCGGGCC-GCGA---CGCGAGCGAccucc -5'
11097 5' -63.5 NC_002794.1 + 50582 0.68 0.513978
Target:  5'- cGUGCgCGGCgGCUGgGUggccggCGCcGGGGGg -3'
miRNA:   3'- -CGCGgGCCG-CGACgCGa-----GCGaCCUCC- -5'
11097 5' -63.5 NC_002794.1 + 107002 0.68 0.504021
Target:  5'- gGCGCUggccgacgcgaCGGUGCUcaccgcgGCGC-CGCUGGGGa -3'
miRNA:   3'- -CGCGG-----------GCCGCGA-------CGCGaGCGACCUCc -5'
11097 5' -63.5 NC_002794.1 + 44713 0.69 0.495936
Target:  5'- cGCGaCCgCGGCGaCgucggccgGCGC-CGCcGGAGGg -3'
miRNA:   3'- -CGC-GG-GCCGC-Ga-------CGCGaGCGaCCUCC- -5'
11097 5' -63.5 NC_002794.1 + 95883 0.69 0.495936
Target:  5'- gGCGaCCCGGCgGCgaggGCGCacgacguggUGCgGGAGGu -3'
miRNA:   3'- -CGC-GGGCCG-CGa---CGCGa--------GCGaCCUCC- -5'
11097 5' -63.5 NC_002794.1 + 91112 0.69 0.478186
Target:  5'- aCGCCgGGCaGCUgGUGCcgUGCgUGGAGGa -3'
miRNA:   3'- cGCGGgCCG-CGA-CGCGa-GCG-ACCUCC- -5'
11097 5' -63.5 NC_002794.1 + 137650 0.69 0.478186
Target:  5'- gGCGCCgGGC-CUccgGCGC-CGCUGGugcGGa -3'
miRNA:   3'- -CGCGGgCCGcGA---CGCGaGCGACCu--CC- -5'
11097 5' -63.5 NC_002794.1 + 143275 0.69 0.478186
Target:  5'- -gGCCCGGCGCcgGcCGCUCGg-GGucGGg -3'
miRNA:   3'- cgCGGGCCGCGa-C-GCGAGCgaCCu-CC- -5'
11097 5' -63.5 NC_002794.1 + 107530 0.69 0.453022
Target:  5'- aCGgCCGGCGCgGCGCcggcggcgacgaccgCGgUGGGGGa -3'
miRNA:   3'- cGCgGGCCGCGaCGCGa--------------GCgACCUCC- -5'
11097 5' -63.5 NC_002794.1 + 125338 0.69 0.452167
Target:  5'- cGCGCCaCGGCGCaccgGCaGC-CGCUGGccGu -3'
miRNA:   3'- -CGCGG-GCCGCGa---CG-CGaGCGACCucC- -5'
11097 5' -63.5 NC_002794.1 + 93987 0.69 0.452167
Target:  5'- cGCGCUCGGCGCgGaCGCcggCGCcGGcGGc -3'
miRNA:   3'- -CGCGGGCCGCGaC-GCGa--GCGaCCuCC- -5'
11097 5' -63.5 NC_002794.1 + 104733 0.69 0.452167
Target:  5'- uGgGCCCGGUGgaGCGCUCGaucucgUGGuagcGGu -3'
miRNA:   3'- -CgCGGGCCGCgaCGCGAGCg-----ACCu---CC- -5'
11097 5' -63.5 NC_002794.1 + 109516 0.69 0.452167
Target:  5'- cCGCCCGGC-CcGCGCUCGUUcGGcgucGGGc -3'
miRNA:   3'- cGCGGGCCGcGaCGCGAGCGA-CC----UCC- -5'
11097 5' -63.5 NC_002794.1 + 91239 0.7 0.443666
Target:  5'- gGCGgCCGucGgGCUGCGCUCGC-GGAc- -3'
miRNA:   3'- -CGCgGGC--CgCGACGCGAGCGaCCUcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.