miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11097 5' -63.5 NC_002794.1 + 552 0.66 0.655049
Target:  5'- uUGCCCGGC-CUcgGCGCggCGgUGGcAGGu -3'
miRNA:   3'- cGCGGGCCGcGA--CGCGa-GCgACC-UCC- -5'
11097 5' -63.5 NC_002794.1 + 8463 0.67 0.587471
Target:  5'- cUGaCCCGGCuguuccggaccacGCaaCGCUCGCUGGAGu -3'
miRNA:   3'- cGC-GGGCCG-------------CGacGCGAGCGACCUCc -5'
11097 5' -63.5 NC_002794.1 + 11983 0.67 0.578963
Target:  5'- gGCGUCCGGCgGCUGguUGCU-GCUGuGuGGa -3'
miRNA:   3'- -CGCGGGCCG-CGAC--GCGAgCGAC-CuCC- -5'
11097 5' -63.5 NC_002794.1 + 14465 0.68 0.550814
Target:  5'- cGUGUCgagCGGCGCgccGCGCUCGCUGu--- -3'
miRNA:   3'- -CGCGG---GCCGCGa--CGCGAGCGACcucc -5'
11097 5' -63.5 NC_002794.1 + 17436 0.67 0.56954
Target:  5'- cGCGCcgCCGGCGCUcGgGCcCGCgaccGAGGu -3'
miRNA:   3'- -CGCG--GGCCGCGA-CgCGaGCGac--CUCC- -5'
11097 5' -63.5 NC_002794.1 + 18915 0.67 0.578963
Target:  5'- gGCGCCCggacuGGCGCUGgaucgGUUCGUgacGGAGa -3'
miRNA:   3'- -CGCGGG-----CCGCGACg----CGAGCGa--CCUCc -5'
11097 5' -63.5 NC_002794.1 + 19527 0.67 0.607406
Target:  5'- aGCG-CCGGCGCgGCGCggccCGCcGGugucGGa -3'
miRNA:   3'- -CGCgGGCCGCGaCGCGa---GCGaCCu---CC- -5'
11097 5' -63.5 NC_002794.1 + 20623 0.66 0.674041
Target:  5'- aUGCCCGGCuccgGCUGC-CUCgacgGCUGGugcgagcaAGGg -3'
miRNA:   3'- cGCGGGCCG----CGACGcGAG----CGACC--------UCC- -5'
11097 5' -63.5 NC_002794.1 + 21708 0.71 0.39464
Target:  5'- gGCGUCCacgGGCGCUGCG-UCGCgaucGcGAGGc -3'
miRNA:   3'- -CGCGGG---CCGCGACGCgAGCGa---C-CUCC- -5'
11097 5' -63.5 NC_002794.1 + 30735 0.71 0.39464
Target:  5'- cCGCCCGaacuggccGCgGCUG-GCgCGCUGGAGGa -3'
miRNA:   3'- cGCGGGC--------CG-CGACgCGaGCGACCUCC- -5'
11097 5' -63.5 NC_002794.1 + 33674 0.67 0.597901
Target:  5'- cGCGCU---CGCUGCGCUCGCUGc--- -3'
miRNA:   3'- -CGCGGgccGCGACGCGAGCGACcucc -5'
11097 5' -63.5 NC_002794.1 + 35544 0.75 0.220652
Target:  5'- cGCGagaCCCGGCGCUcGCGCgcgCGCgUGGuGGc -3'
miRNA:   3'- -CGC---GGGCCGCGA-CGCGa--GCG-ACCuCC- -5'
11097 5' -63.5 NC_002794.1 + 37740 0.66 0.664556
Target:  5'- gGCGCcgCCGGCgGCgGCGCggcggCGCcGGcGGGa -3'
miRNA:   3'- -CGCG--GGCCG-CGaCGCGa----GCGaCC-UCC- -5'
11097 5' -63.5 NC_002794.1 + 38175 0.66 0.635994
Target:  5'- uGCGCUCGGCGaCgaagGCGUUC-CUGGu-- -3'
miRNA:   3'- -CGCGGGCCGC-Ga---CGCGAGcGACCucc -5'
11097 5' -63.5 NC_002794.1 + 39697 0.66 0.645526
Target:  5'- uCGCCCGGCaccGCcgGCGCUaccgacCGCUGcagcaucacgacGAGGa -3'
miRNA:   3'- cGCGGGCCG---CGa-CGCGA------GCGAC------------CUCC- -5'
11097 5' -63.5 NC_002794.1 + 42851 0.67 0.597901
Target:  5'- aGCGCCCGGCcucgGCguaCGCUUuCUGGAa- -3'
miRNA:   3'- -CGCGGGCCG----CGac-GCGAGcGACCUcc -5'
11097 5' -63.5 NC_002794.1 + 44713 0.69 0.495936
Target:  5'- cGCGaCCgCGGCGaCgucggccgGCGC-CGCcGGAGGg -3'
miRNA:   3'- -CGC-GG-GCCGC-Ga-------CGCGaGCGaCCUCC- -5'
11097 5' -63.5 NC_002794.1 + 50582 0.68 0.513978
Target:  5'- cGUGCgCGGCgGCUGgGUggccggCGCcGGGGGg -3'
miRNA:   3'- -CGCGgGCCG-CGACgCGa-----GCGaCCUCC- -5'
11097 5' -63.5 NC_002794.1 + 55809 0.74 0.264158
Target:  5'- aGCGCCgGGCGCggGCGCgCGCUGauGGc -3'
miRNA:   3'- -CGCGGgCCGCGa-CGCGaGCGACcuCC- -5'
11097 5' -63.5 NC_002794.1 + 56510 0.66 0.673093
Target:  5'- -gGCCCcgcgGGCGCUccgGCGCUCGUUccggucgccauccGGAGc -3'
miRNA:   3'- cgCGGG----CCGCGA---CGCGAGCGA-------------CCUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.