Results 21 - 40 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11097 | 5' | -63.5 | NC_002794.1 | + | 56584 | 0.66 | 0.635994 |
Target: 5'- cGCGCCgCGGCGCc-CGC-CGCcggccuccucaUGGAGa -3' miRNA: 3'- -CGCGG-GCCGCGacGCGaGCG-----------ACCUCc -5' |
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11097 | 5' | -63.5 | NC_002794.1 | + | 58085 | 0.68 | 0.523099 |
Target: 5'- gGCgGCCCGGCGCccGCGCUcgacCGCUGc--- -3' miRNA: 3'- -CG-CGGGCCGCGa-CGCGA----GCGACcucc -5' |
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11097 | 5' | -63.5 | NC_002794.1 | + | 58370 | 0.68 | 0.541522 |
Target: 5'- cCGCCCgacuuccaggaGGCGCgcggGCGCcagcUGCUGGAGc -3' miRNA: 3'- cGCGGG-----------CCGCGa---CGCGa---GCGACCUCc -5' |
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11097 | 5' | -63.5 | NC_002794.1 | + | 58542 | 0.68 | 0.541522 |
Target: 5'- uCGCCgCGGCGCgcGCGCU-GCUGGc-- -3' miRNA: 3'- cGCGG-GCCGCGa-CGCGAgCGACCucc -5' |
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11097 | 5' | -63.5 | NC_002794.1 | + | 59368 | 0.71 | 0.379094 |
Target: 5'- uGCGCCaccaCGGCGCcGCGCcUGCUGcGGGc -3' miRNA: 3'- -CGCGG----GCCGCGaCGCGaGCGACcUCC- -5' |
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11097 | 5' | -63.5 | NC_002794.1 | + | 62995 | 0.68 | 0.548952 |
Target: 5'- gGCGCCUGGCacccccgcacgugGCUggagcugGUGCUCGCcugcgcgcaGGAGGa -3' miRNA: 3'- -CGCGGGCCG-------------CGA-------CGCGAGCGa--------CCUCC- -5' |
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11097 | 5' | -63.5 | NC_002794.1 | + | 66826 | 0.74 | 0.24159 |
Target: 5'- gGCGCCCGGCGCgacuccggGCGCcgccgucggCGCgGcGAGGc -3' miRNA: 3'- -CGCGGGCCGCGa-------CGCGa--------GCGaC-CUCC- -5' |
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11097 | 5' | -63.5 | NC_002794.1 | + | 66959 | 0.7 | 0.435256 |
Target: 5'- -aGgCCGGCGaguCGCUCGCcGGGGGa -3' miRNA: 3'- cgCgGGCCGCgacGCGAGCGaCCUCC- -5' |
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11097 | 5' | -63.5 | NC_002794.1 | + | 67203 | 0.72 | 0.334979 |
Target: 5'- aGCGUCCgGGCGgUGCGCUCgGCgccgGGcGGc -3' miRNA: 3'- -CGCGGG-CCGCgACGCGAG-CGa---CCuCC- -5' |
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11097 | 5' | -63.5 | NC_002794.1 | + | 70676 | 0.72 | 0.328001 |
Target: 5'- cCGCCgCGGCGgugacgucCUGuCGC-CGCUGGGGGu -3' miRNA: 3'- cGCGG-GCCGC--------GAC-GCGaGCGACCUCC- -5' |
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11097 | 5' | -63.5 | NC_002794.1 | + | 79043 | 0.68 | 0.513978 |
Target: 5'- -gGCCCGGcCGCUcccGCGCUCGCUc---- -3' miRNA: 3'- cgCGGGCC-GCGA---CGCGAGCGAccucc -5' |
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11097 | 5' | -63.5 | NC_002794.1 | + | 82203 | 0.68 | 0.513978 |
Target: 5'- aGCGCCCGGCacuccuuCUGCGCUCGagcccGGccGa -3' miRNA: 3'- -CGCGGGCCGc------GACGCGAGCga---CCucC- -5' |
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11097 | 5' | -63.5 | NC_002794.1 | + | 91112 | 0.69 | 0.478186 |
Target: 5'- aCGCCgGGCaGCUgGUGCcgUGCgUGGAGGa -3' miRNA: 3'- cGCGGgCCG-CGA-CGCGa-GCG-ACCUCC- -5' |
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11097 | 5' | -63.5 | NC_002794.1 | + | 91143 | 0.7 | 0.42694 |
Target: 5'- gGCGCggaCGGUGCUGCuGggCGCcgUGGAGGc -3' miRNA: 3'- -CGCGg--GCCGCGACG-CgaGCG--ACCUCC- -5' |
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11097 | 5' | -63.5 | NC_002794.1 | + | 91239 | 0.7 | 0.443666 |
Target: 5'- gGCGgCCGucGgGCUGCGCUCGC-GGAc- -3' miRNA: 3'- -CGCgGGC--CgCGACGCGAGCGaCCUcc -5' |
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11097 | 5' | -63.5 | NC_002794.1 | + | 93987 | 0.69 | 0.452167 |
Target: 5'- cGCGCUCGGCGCgGaCGCcggCGCcGGcGGc -3' miRNA: 3'- -CGCGGGCCGCGaC-GCGa--GCGaCCuCC- -5' |
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11097 | 5' | -63.5 | NC_002794.1 | + | 94835 | 0.7 | 0.418718 |
Target: 5'- uGCGgCUGGacCGCUGUGCcugucacgacaCGCUGGAGGu -3' miRNA: 3'- -CGCgGGCC--GCGACGCGa----------GCGACCUCC- -5' |
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11097 | 5' | -63.5 | NC_002794.1 | + | 95781 | 0.68 | 0.523099 |
Target: 5'- gGCGgCCGGgGCgagagGCGCg-GC-GGAGGa -3' miRNA: 3'- -CGCgGGCCgCGa----CGCGagCGaCCUCC- -5' |
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11097 | 5' | -63.5 | NC_002794.1 | + | 95883 | 0.69 | 0.495936 |
Target: 5'- gGCGaCCCGGCgGCgaggGCGCacgacguggUGCgGGAGGu -3' miRNA: 3'- -CGC-GGGCCG-CGa---CGCGa--------GCGaCCUCC- -5' |
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11097 | 5' | -63.5 | NC_002794.1 | + | 96182 | 0.66 | 0.63504 |
Target: 5'- gGUGCaCCGGCGcCUGCcggccgagucccuGCcggCGCUGGgucAGGa -3' miRNA: 3'- -CGCG-GGCCGC-GACG-------------CGa--GCGACC---UCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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