miRNA display CGI


Results 41 - 60 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11097 5' -63.5 NC_002794.1 + 100326 0.74 0.23092
Target:  5'- cGCGgCCGGCGCacgGCcgGCUCucgaccgccgaGCUGGAGGu -3'
miRNA:   3'- -CGCgGGCCGCGa--CG--CGAG-----------CGACCUCC- -5'
11097 5' -63.5 NC_002794.1 + 101268 0.66 0.626459
Target:  5'- cGCcCCCGGCGCcggugGCgGCg-GCggGGAGGa -3'
miRNA:   3'- -CGcGGGCCGCGa----CG-CGagCGa-CCUCC- -5'
11097 5' -63.5 NC_002794.1 + 101788 0.74 0.252666
Target:  5'- cUGUCCGaGUGCUGCGC-CGCUGGuuGGc -3'
miRNA:   3'- cGCGGGC-CGCGACGCGaGCGACCu-CC- -5'
11097 5' -63.5 NC_002794.1 + 102644 0.67 0.597901
Target:  5'- cCGgCUGGCgGC-GCGCUCGgaGGAGc -3'
miRNA:   3'- cGCgGGCCG-CGaCGCGAGCgaCCUCc -5'
11097 5' -63.5 NC_002794.1 + 104733 0.69 0.452167
Target:  5'- uGgGCCCGGUGgaGCGCUCGaucucgUGGuagcGGu -3'
miRNA:   3'- -CgCGGGCCGCgaCGCGAGCg-----ACCu---CC- -5'
11097 5' -63.5 NC_002794.1 + 106418 0.67 0.588418
Target:  5'- gGCGCCgGG-GCUcaugGCGCU-GUUGGAGa -3'
miRNA:   3'- -CGCGGgCCgCGA----CGCGAgCGACCUCc -5'
11097 5' -63.5 NC_002794.1 + 107002 0.68 0.504021
Target:  5'- gGCGCUggccgacgcgaCGGUGCUcaccgcgGCGC-CGCUGGGGa -3'
miRNA:   3'- -CGCGG-----------GCCGCGA-------CGCGaGCGACCUCc -5'
11097 5' -63.5 NC_002794.1 + 107210 0.72 0.342064
Target:  5'- uCGCCCGGCGCcGCcggGCggcgCGCgacGGGGGc -3'
miRNA:   3'- cGCGGGCCGCGaCG---CGa---GCGa--CCUCC- -5'
11097 5' -63.5 NC_002794.1 + 107530 0.69 0.453022
Target:  5'- aCGgCCGGCGCgGCGCcggcggcgacgaccgCGgUGGGGGa -3'
miRNA:   3'- cGCgGGCCGCGaCGCGa--------------GCgACCUCC- -5'
11097 5' -63.5 NC_002794.1 + 107943 0.66 0.664556
Target:  5'- aGCGgCUGGCucGCUacccGCGCgagaaGCUGGAGa -3'
miRNA:   3'- -CGCgGGCCG--CGA----CGCGag---CGACCUCc -5'
11097 5' -63.5 NC_002794.1 + 108078 0.66 0.674041
Target:  5'- cGUGCCUGGCGUUGUuacGCUCuCgGGAu- -3'
miRNA:   3'- -CGCGGGCCGCGACG---CGAGcGaCCUcc -5'
11097 5' -63.5 NC_002794.1 + 109516 0.69 0.452167
Target:  5'- cCGCCCGGC-CcGCGCUCGUUcGGcgucGGGc -3'
miRNA:   3'- cGCGGGCCGcGaCGCGAGCGA-CC----UCC- -5'
11097 5' -63.5 NC_002794.1 + 113169 0.7 0.435256
Target:  5'- cGCGCgCgGGCgGCgGCGgUCGC-GGAGGc -3'
miRNA:   3'- -CGCG-GgCCG-CGaCGCgAGCGaCCUCC- -5'
11097 5' -63.5 NC_002794.1 + 113294 0.66 0.626459
Target:  5'- cUGCUCGGCGCaGCGCUCGUc----- -3'
miRNA:   3'- cGCGGGCCGCGaCGCGAGCGaccucc -5'
11097 5' -63.5 NC_002794.1 + 114973 0.66 0.655049
Target:  5'- aGCaGCUCGGCGCagGCGUccuguaguUCGC-GGAGc -3'
miRNA:   3'- -CG-CGGGCCGCGa-CGCG--------AGCGaCCUCc -5'
11097 5' -63.5 NC_002794.1 + 115881 0.71 0.379094
Target:  5'- gGCGUCCGGgGCgucCGCggagCGCgGGGGGu -3'
miRNA:   3'- -CGCGGGCCgCGac-GCGa---GCGaCCUCC- -5'
11097 5' -63.5 NC_002794.1 + 116081 0.73 0.294736
Target:  5'- aGCGCUCGGCGCgGCGgUCGUcgccGGGGu -3'
miRNA:   3'- -CGCGGGCCGCGaCGCgAGCGa---CCUCc -5'
11097 5' -63.5 NC_002794.1 + 116865 0.66 0.674041
Target:  5'- gGCGgCC-GUGUcGCGCUCGUcagGGGGGc -3'
miRNA:   3'- -CGCgGGcCGCGaCGCGAGCGa--CCUCC- -5'
11097 5' -63.5 NC_002794.1 + 119249 0.71 0.349257
Target:  5'- cGUGUCCucggcggcGGCGUaGUGCUCGUacUGGAGGg -3'
miRNA:   3'- -CGCGGG--------CCGCGaCGCGAGCG--ACCUCC- -5'
11097 5' -63.5 NC_002794.1 + 119737 0.67 0.588418
Target:  5'- gGCGCUCGGCGUguuUGCGCa-GCUccGGAccaGGu -3'
miRNA:   3'- -CGCGGGCCGCG---ACGCGagCGA--CCU---CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.