miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11097 5' -63.5 NC_002794.1 + 191192 0.66 0.673093
Target:  5'- uCGCCCGGCcgcccgcccGCU-CGCUCGCUcgcucucucgcccGaGAGGc -3'
miRNA:   3'- cGCGGGCCG---------CGAcGCGAGCGA-------------C-CUCC- -5'
11097 5' -63.5 NC_002794.1 + 187605 0.75 0.225736
Target:  5'- aCGCCCGGCGUcGCccagaGC-CGCUGGAGa -3'
miRNA:   3'- cGCGGGCCGCGaCG-----CGaGCGACCUCc -5'
11097 5' -63.5 NC_002794.1 + 185192 0.68 0.550814
Target:  5'- cGCGgUCGGCGCggucaucGCgGCUCGCgccgcGGAGa -3'
miRNA:   3'- -CGCgGGCCGCGa------CG-CGAGCGa----CCUCc -5'
11097 5' -63.5 NC_002794.1 + 180838 0.67 0.573305
Target:  5'- -aGCCCGGCGUcaccgucgucuacgGC-CUCGUcGGAGGc -3'
miRNA:   3'- cgCGGGCCGCGa-------------CGcGAGCGaCCUCC- -5'
11097 5' -63.5 NC_002794.1 + 150090 0.66 0.655049
Target:  5'- uGCGCUgGGCGgaGCGUgagGCcGGAGc -3'
miRNA:   3'- -CGCGGgCCGCgaCGCGag-CGaCCUCc -5'
11097 5' -63.5 NC_002794.1 + 149277 0.75 0.20598
Target:  5'- cCGCCggCGGCGCgGCgGCUCGCUcacGGGGGg -3'
miRNA:   3'- cGCGG--GCCGCGaCG-CGAGCGA---CCUCC- -5'
11097 5' -63.5 NC_002794.1 + 148205 0.66 0.674041
Target:  5'- gGCG-CCGGCGC-GCGCUCGaucGGucuccGGu -3'
miRNA:   3'- -CGCgGGCCGCGaCGCGAGCga-CCu----CC- -5'
11097 5' -63.5 NC_002794.1 + 148134 0.67 0.578019
Target:  5'- gGCGCggggccgCCGGgGCgaggGCGgUCGCgacggaaGGAGGg -3'
miRNA:   3'- -CGCG-------GGCCgCGa---CGCgAGCGa------CCUCC- -5'
11097 5' -63.5 NC_002794.1 + 146835 0.66 0.664556
Target:  5'- uCGUuuGGCGCgagagucggUGCGCgUCGUucgcguucgggUGGGGGg -3'
miRNA:   3'- cGCGggCCGCG---------ACGCG-AGCG-----------ACCUCC- -5'
11097 5' -63.5 NC_002794.1 + 143275 0.69 0.478186
Target:  5'- -gGCCCGGCGCcgGcCGCUCGg-GGucGGg -3'
miRNA:   3'- cgCGGGCCGCGa-C-GCGAGCgaCCu-CC- -5'
11097 5' -63.5 NC_002794.1 + 140485 0.68 0.550814
Target:  5'- gGCGCCCgauuaccgGGCGCUGUaccGCgacuuccacCGCUGGcGGc -3'
miRNA:   3'- -CGCGGG--------CCGCGACG---CGa--------GCGACCuCC- -5'
11097 5' -63.5 NC_002794.1 + 137650 0.69 0.478186
Target:  5'- gGCGCCgGGC-CUccgGCGC-CGCUGGugcGGa -3'
miRNA:   3'- -CGCGGgCCGcGA---CGCGaGCGACCu--CC- -5'
11097 5' -63.5 NC_002794.1 + 136705 0.66 0.645526
Target:  5'- aGCGCCCGGUGCagGCGCcggucccggCGUccaGGcGGu -3'
miRNA:   3'- -CGCGGGCCGCGa-CGCGa--------GCGa--CCuCC- -5'
11097 5' -63.5 NC_002794.1 + 135976 0.67 0.578963
Target:  5'- -aGCCCGGCGCcGgGCuccucuUCGCUGuccGGGu -3'
miRNA:   3'- cgCGGGCCGCGaCgCG------AGCGACc--UCC- -5'
11097 5' -63.5 NC_002794.1 + 128570 0.66 0.635994
Target:  5'- cGCGCUCGGCGUcgUGUacacGUUCGCgacccuGAGGc -3'
miRNA:   3'- -CGCGGGCCGCG--ACG----CGAGCGac----CUCC- -5'
11097 5' -63.5 NC_002794.1 + 126352 0.67 0.616928
Target:  5'- cGUGuCCCGGCuccgauuucgccGCUGCGUgggCGCcGGGGc -3'
miRNA:   3'- -CGC-GGGCCG------------CGACGCGa--GCGaCCUCc -5'
11097 5' -63.5 NC_002794.1 + 126303 0.72 0.3378
Target:  5'- cGCGCCUGGCGgUGCagcggagcgugacccGCUCGCUGa--- -3'
miRNA:   3'- -CGCGGGCCGCgACG---------------CGAGCGACcucc -5'
11097 5' -63.5 NC_002794.1 + 126273 0.66 0.645526
Target:  5'- -gGCUggCGGCGCUGgGCUUGCUGu--- -3'
miRNA:   3'- cgCGG--GCCGCGACgCGAGCGACcucc -5'
11097 5' -63.5 NC_002794.1 + 126112 0.66 0.645526
Target:  5'- -gGCCCugGGCGCcGCGCUCGuCUGcgccGGu -3'
miRNA:   3'- cgCGGG--CCGCGaCGCGAGC-GACcu--CC- -5'
11097 5' -63.5 NC_002794.1 + 125834 0.74 0.252666
Target:  5'- gGCGCCCuGCuGCUGCGCUgccgGCUGGAc- -3'
miRNA:   3'- -CGCGGGcCG-CGACGCGAg---CGACCUcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.