Results 21 - 40 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11097 | 5' | -63.5 | NC_002794.1 | + | 125338 | 0.69 | 0.452167 |
Target: 5'- cGCGCCaCGGCGCaccgGCaGC-CGCUGGccGu -3' miRNA: 3'- -CGCGG-GCCGCGa---CG-CGaGCGACCucC- -5' |
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11097 | 5' | -63.5 | NC_002794.1 | + | 122479 | 0.66 | 0.664556 |
Target: 5'- uCGCCCaGGCcggGCUgaacgagucgGCGC-CGCaGGAGGg -3' miRNA: 3'- cGCGGG-CCG---CGA----------CGCGaGCGaCCUCC- -5' |
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11097 | 5' | -63.5 | NC_002794.1 | + | 119737 | 0.67 | 0.588418 |
Target: 5'- gGCGCUCGGCGUguuUGCGCa-GCUccGGAccaGGu -3' miRNA: 3'- -CGCGGGCCGCG---ACGCGagCGA--CCU---CC- -5' |
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11097 | 5' | -63.5 | NC_002794.1 | + | 119249 | 0.71 | 0.349257 |
Target: 5'- cGUGUCCucggcggcGGCGUaGUGCUCGUacUGGAGGg -3' miRNA: 3'- -CGCGGG--------CCGCGaCGCGAGCG--ACCUCC- -5' |
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11097 | 5' | -63.5 | NC_002794.1 | + | 116865 | 0.66 | 0.674041 |
Target: 5'- gGCGgCC-GUGUcGCGCUCGUcagGGGGGc -3' miRNA: 3'- -CGCgGGcCGCGaCGCGAGCGa--CCUCC- -5' |
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11097 | 5' | -63.5 | NC_002794.1 | + | 116081 | 0.73 | 0.294736 |
Target: 5'- aGCGCUCGGCGCgGCGgUCGUcgccGGGGu -3' miRNA: 3'- -CGCGGGCCGCGaCGCgAGCGa---CCUCc -5' |
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11097 | 5' | -63.5 | NC_002794.1 | + | 115881 | 0.71 | 0.379094 |
Target: 5'- gGCGUCCGGgGCgucCGCggagCGCgGGGGGu -3' miRNA: 3'- -CGCGGGCCgCGac-GCGa---GCGaCCUCC- -5' |
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11097 | 5' | -63.5 | NC_002794.1 | + | 114973 | 0.66 | 0.655049 |
Target: 5'- aGCaGCUCGGCGCagGCGUccuguaguUCGC-GGAGc -3' miRNA: 3'- -CG-CGGGCCGCGa-CGCG--------AGCGaCCUCc -5' |
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11097 | 5' | -63.5 | NC_002794.1 | + | 113294 | 0.66 | 0.626459 |
Target: 5'- cUGCUCGGCGCaGCGCUCGUc----- -3' miRNA: 3'- cGCGGGCCGCGaCGCGAGCGaccucc -5' |
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11097 | 5' | -63.5 | NC_002794.1 | + | 113169 | 0.7 | 0.435256 |
Target: 5'- cGCGCgCgGGCgGCgGCGgUCGC-GGAGGc -3' miRNA: 3'- -CGCG-GgCCG-CGaCGCgAGCGaCCUCC- -5' |
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11097 | 5' | -63.5 | NC_002794.1 | + | 109516 | 0.69 | 0.452167 |
Target: 5'- cCGCCCGGC-CcGCGCUCGUUcGGcgucGGGc -3' miRNA: 3'- cGCGGGCCGcGaCGCGAGCGA-CC----UCC- -5' |
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11097 | 5' | -63.5 | NC_002794.1 | + | 108078 | 0.66 | 0.674041 |
Target: 5'- cGUGCCUGGCGUUGUuacGCUCuCgGGAu- -3' miRNA: 3'- -CGCGGGCCGCGACG---CGAGcGaCCUcc -5' |
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11097 | 5' | -63.5 | NC_002794.1 | + | 107943 | 0.66 | 0.664556 |
Target: 5'- aGCGgCUGGCucGCUacccGCGCgagaaGCUGGAGa -3' miRNA: 3'- -CGCgGGCCG--CGA----CGCGag---CGACCUCc -5' |
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11097 | 5' | -63.5 | NC_002794.1 | + | 107530 | 0.69 | 0.453022 |
Target: 5'- aCGgCCGGCGCgGCGCcggcggcgacgaccgCGgUGGGGGa -3' miRNA: 3'- cGCgGGCCGCGaCGCGa--------------GCgACCUCC- -5' |
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11097 | 5' | -63.5 | NC_002794.1 | + | 107210 | 0.72 | 0.342064 |
Target: 5'- uCGCCCGGCGCcGCcggGCggcgCGCgacGGGGGc -3' miRNA: 3'- cGCGGGCCGCGaCG---CGa---GCGa--CCUCC- -5' |
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11097 | 5' | -63.5 | NC_002794.1 | + | 107002 | 0.68 | 0.504021 |
Target: 5'- gGCGCUggccgacgcgaCGGUGCUcaccgcgGCGC-CGCUGGGGa -3' miRNA: 3'- -CGCGG-----------GCCGCGA-------CGCGaGCGACCUCc -5' |
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11097 | 5' | -63.5 | NC_002794.1 | + | 106418 | 0.67 | 0.588418 |
Target: 5'- gGCGCCgGG-GCUcaugGCGCU-GUUGGAGa -3' miRNA: 3'- -CGCGGgCCgCGA----CGCGAgCGACCUCc -5' |
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11097 | 5' | -63.5 | NC_002794.1 | + | 104733 | 0.69 | 0.452167 |
Target: 5'- uGgGCCCGGUGgaGCGCUCGaucucgUGGuagcGGu -3' miRNA: 3'- -CgCGGGCCGCgaCGCGAGCg-----ACCu---CC- -5' |
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11097 | 5' | -63.5 | NC_002794.1 | + | 102644 | 0.67 | 0.597901 |
Target: 5'- cCGgCUGGCgGC-GCGCUCGgaGGAGc -3' miRNA: 3'- cGCgGGCCG-CGaCGCGAGCgaCCUCc -5' |
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11097 | 5' | -63.5 | NC_002794.1 | + | 101788 | 0.74 | 0.252666 |
Target: 5'- cUGUCCGaGUGCUGCGC-CGCUGGuuGGc -3' miRNA: 3'- cGCGGGC-CGCGACGCGaGCGACCu-CC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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