miRNA display CGI


Results 41 - 60 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11097 5' -63.5 NC_002794.1 + 191192 0.66 0.673093
Target:  5'- uCGCCCGGCcgcccgcccGCU-CGCUCGCUcgcucucucgcccGaGAGGc -3'
miRNA:   3'- cGCGGGCCG---------CGAcGCGAGCGA-------------C-CUCC- -5'
11097 5' -63.5 NC_002794.1 + 56510 0.66 0.673093
Target:  5'- -gGCCCcgcgGGCGCUccgGCGCUCGUUccggucgccauccGGAGc -3'
miRNA:   3'- cgCGGG----CCGCGA---CGCGAGCGA-------------CCUCc -5'
11097 5' -63.5 NC_002794.1 + 20623 0.66 0.674041
Target:  5'- aUGCCCGGCuccgGCUGC-CUCgacgGCUGGugcgagcaAGGg -3'
miRNA:   3'- cGCGGGCCG----CGACGcGAG----CGACC--------UCC- -5'
11097 5' -63.5 NC_002794.1 + 116865 0.66 0.674041
Target:  5'- gGCGgCC-GUGUcGCGCUCGUcagGGGGGc -3'
miRNA:   3'- -CGCgGGcCGCGaCGCGAGCGa--CCUCC- -5'
11097 5' -63.5 NC_002794.1 + 108078 0.66 0.674041
Target:  5'- cGUGCCUGGCGUUGUuacGCUCuCgGGAu- -3'
miRNA:   3'- -CGCGGGCCGCGACG---CGAGcGaCCUcc -5'
11097 5' -63.5 NC_002794.1 + 114973 0.66 0.655049
Target:  5'- aGCaGCUCGGCGCagGCGUccuguaguUCGC-GGAGc -3'
miRNA:   3'- -CG-CGGGCCGCGa-CGCG--------AGCGaCCUCc -5'
11097 5' -63.5 NC_002794.1 + 56584 0.66 0.635994
Target:  5'- cGCGCCgCGGCGCc-CGC-CGCcggccuccucaUGGAGa -3'
miRNA:   3'- -CGCGG-GCCGCGacGCGaGCG-----------ACCUCc -5'
11097 5' -63.5 NC_002794.1 + 119737 0.67 0.588418
Target:  5'- gGCGCUCGGCGUguuUGCGCa-GCUccGGAccaGGu -3'
miRNA:   3'- -CGCGGGCCGCG---ACGCGagCGA--CCU---CC- -5'
11097 5' -63.5 NC_002794.1 + 102644 0.67 0.597901
Target:  5'- cCGgCUGGCgGC-GCGCUCGgaGGAGc -3'
miRNA:   3'- cGCgGGCCG-CGaCGCGAGCgaCCUCc -5'
11097 5' -63.5 NC_002794.1 + 42851 0.67 0.597901
Target:  5'- aGCGCCCGGCcucgGCguaCGCUUuCUGGAa- -3'
miRNA:   3'- -CGCGGGCCG----CGac-GCGAGcGACCUcc -5'
11097 5' -63.5 NC_002794.1 + 33674 0.67 0.597901
Target:  5'- cGCGCU---CGCUGCGCUCGCUGc--- -3'
miRNA:   3'- -CGCGGgccGCGACGCGAGCGACcucc -5'
11097 5' -63.5 NC_002794.1 + 19527 0.67 0.607406
Target:  5'- aGCG-CCGGCGCgGCGCggccCGCcGGugucGGa -3'
miRNA:   3'- -CGCgGGCCGCGaCGCGa---GCGaCCu---CC- -5'
11097 5' -63.5 NC_002794.1 + 113294 0.66 0.626459
Target:  5'- cUGCUCGGCGCaGCGCUCGUc----- -3'
miRNA:   3'- cGCGGGCCGCGaCGCGAGCGaccucc -5'
11097 5' -63.5 NC_002794.1 + 126352 0.67 0.616928
Target:  5'- cGUGuCCCGGCuccgauuucgccGCUGCGUgggCGCcGGGGc -3'
miRNA:   3'- -CGC-GGGCCG------------CGACGCGa--GCGaCCUCc -5'
11097 5' -63.5 NC_002794.1 + 96182 0.66 0.63504
Target:  5'- gGUGCaCCGGCGcCUGCcggccgagucccuGCcggCGCUGGgucAGGa -3'
miRNA:   3'- -CGCG-GGCCGC-GACG-------------CGa--GCGACC---UCC- -5'
11097 5' -63.5 NC_002794.1 + 101268 0.66 0.626459
Target:  5'- cGCcCCCGGCGCcggugGCgGCg-GCggGGAGGa -3'
miRNA:   3'- -CGcGGGCCGCGa----CG-CGagCGa-CCUCC- -5'
11097 5' -63.5 NC_002794.1 + 38175 0.66 0.635994
Target:  5'- uGCGCUCGGCGaCgaagGCGUUC-CUGGu-- -3'
miRNA:   3'- -CGCGGGCCGC-Ga---CGCGAGcGACCucc -5'
11097 5' -63.5 NC_002794.1 + 128570 0.66 0.635994
Target:  5'- cGCGCUCGGCGUcgUGUacacGUUCGCgacccuGAGGc -3'
miRNA:   3'- -CGCGGGCCGCG--ACG----CGAGCGac----CUCC- -5'
11097 5' -63.5 NC_002794.1 + 136705 0.66 0.645526
Target:  5'- aGCGCCCGGUGCagGCGCcggucccggCGUccaGGcGGu -3'
miRNA:   3'- -CGCGGGCCGCGa-CGCGa--------GCGa--CCuCC- -5'
11097 5' -63.5 NC_002794.1 + 126273 0.66 0.645526
Target:  5'- -gGCUggCGGCGCUGgGCUUGCUGu--- -3'
miRNA:   3'- cgCGG--GCCGCGACgCGAGCGACcucc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.