Results 61 - 80 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11097 | 5' | -63.5 | NC_002794.1 | + | 38175 | 0.66 | 0.635994 |
Target: 5'- uGCGCUCGGCGaCgaagGCGUUC-CUGGu-- -3' miRNA: 3'- -CGCGGGCCGC-Ga---CGCGAGcGACCucc -5' |
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11097 | 5' | -63.5 | NC_002794.1 | + | 101268 | 0.66 | 0.626459 |
Target: 5'- cGCcCCCGGCGCcggugGCgGCg-GCggGGAGGa -3' miRNA: 3'- -CGcGGGCCGCGa----CG-CGagCGa-CCUCC- -5' |
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11097 | 5' | -63.5 | NC_002794.1 | + | 135976 | 0.67 | 0.578963 |
Target: 5'- -aGCCCGGCGCcGgGCuccucuUCGCUGuccGGGu -3' miRNA: 3'- cgCGGGCCGCGaCgCG------AGCGACc--UCC- -5' |
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11097 | 5' | -63.5 | NC_002794.1 | + | 11983 | 0.67 | 0.578963 |
Target: 5'- gGCGUCCGGCgGCUGguUGCU-GCUGuGuGGa -3' miRNA: 3'- -CGCGGGCCG-CGAC--GCGAgCGAC-CuCC- -5' |
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11097 | 5' | -63.5 | NC_002794.1 | + | 18915 | 0.67 | 0.578963 |
Target: 5'- gGCGCCCggacuGGCGCUGgaucgGUUCGUgacGGAGa -3' miRNA: 3'- -CGCGGG-----CCGCGACg----CGAGCGa--CCUCc -5' |
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11097 | 5' | -63.5 | NC_002794.1 | + | 180838 | 0.67 | 0.573305 |
Target: 5'- -aGCCCGGCGUcaccgucgucuacgGC-CUCGUcGGAGGc -3' miRNA: 3'- cgCGGGCCGCGa-------------CGcGAGCGaCCUCC- -5' |
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11097 | 5' | -63.5 | NC_002794.1 | + | 148134 | 0.67 | 0.578019 |
Target: 5'- gGCGCggggccgCCGGgGCgaggGCGgUCGCgacggaaGGAGGg -3' miRNA: 3'- -CGCG-------GGCCgCGa---CGCgAGCGa------CCUCC- -5' |
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11097 | 5' | -63.5 | NC_002794.1 | + | 185192 | 0.68 | 0.550814 |
Target: 5'- cGCGgUCGGCGCggucaucGCgGCUCGCgccgcGGAGa -3' miRNA: 3'- -CGCgGGCCGCGa------CG-CGAGCGa----CCUCc -5' |
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11097 | 5' | -63.5 | NC_002794.1 | + | 17436 | 0.67 | 0.56954 |
Target: 5'- cGCGCcgCCGGCGCUcGgGCcCGCgaccGAGGu -3' miRNA: 3'- -CGCG--GGCCGCGA-CgCGaGCGac--CUCC- -5' |
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11097 | 5' | -63.5 | NC_002794.1 | + | 14465 | 0.68 | 0.550814 |
Target: 5'- cGUGUCgagCGGCGCgccGCGCUCGCUGu--- -3' miRNA: 3'- -CGCGG---GCCGCGa--CGCGAGCGACcucc -5' |
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11097 | 5' | -63.5 | NC_002794.1 | + | 8463 | 0.67 | 0.587471 |
Target: 5'- cUGaCCCGGCuguuccggaccacGCaaCGCUCGCUGGAGu -3' miRNA: 3'- cGC-GGGCCG-------------CGacGCGAGCGACCUCc -5' |
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11097 | 5' | -63.5 | NC_002794.1 | + | 106418 | 0.67 | 0.588418 |
Target: 5'- gGCGCCgGG-GCUcaugGCGCU-GUUGGAGa -3' miRNA: 3'- -CGCGGgCCgCGA----CGCGAgCGACCUCc -5' |
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11097 | 5' | -63.5 | NC_002794.1 | + | 96182 | 0.66 | 0.63504 |
Target: 5'- gGUGCaCCGGCGcCUGCcggccgagucccuGCcggCGCUGGgucAGGa -3' miRNA: 3'- -CGCG-GGCCGC-GACG-------------CGa--GCGACC---UCC- -5' |
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11097 | 5' | -63.5 | NC_002794.1 | + | 126352 | 0.67 | 0.616928 |
Target: 5'- cGUGuCCCGGCuccgauuucgccGCUGCGUgggCGCcGGGGc -3' miRNA: 3'- -CGC-GGGCCG------------CGACGCGa--GCGaCCUCc -5' |
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11097 | 5' | -63.5 | NC_002794.1 | + | 113294 | 0.66 | 0.626459 |
Target: 5'- cUGCUCGGCGCaGCGCUCGUc----- -3' miRNA: 3'- cGCGGGCCGCGaCGCGAGCGaccucc -5' |
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11097 | 5' | -63.5 | NC_002794.1 | + | 19527 | 0.67 | 0.607406 |
Target: 5'- aGCG-CCGGCGCgGCGCggccCGCcGGugucGGa -3' miRNA: 3'- -CGCgGGCCGCGaCGCGa---GCGaCCu---CC- -5' |
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11097 | 5' | -63.5 | NC_002794.1 | + | 33674 | 0.67 | 0.597901 |
Target: 5'- cGCGCU---CGCUGCGCUCGCUGc--- -3' miRNA: 3'- -CGCGGgccGCGACGCGAGCGACcucc -5' |
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11097 | 5' | -63.5 | NC_002794.1 | + | 42851 | 0.67 | 0.597901 |
Target: 5'- aGCGCCCGGCcucgGCguaCGCUUuCUGGAa- -3' miRNA: 3'- -CGCGGGCCG----CGac-GCGAGcGACCUcc -5' |
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11097 | 5' | -63.5 | NC_002794.1 | + | 102644 | 0.67 | 0.597901 |
Target: 5'- cCGgCUGGCgGC-GCGCUCGgaGGAGc -3' miRNA: 3'- cGCgGGCCG-CGaCGCGAGCgaCCUCc -5' |
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11097 | 5' | -63.5 | NC_002794.1 | + | 119737 | 0.67 | 0.588418 |
Target: 5'- gGCGCUCGGCGUguuUGCGCa-GCUccGGAccaGGu -3' miRNA: 3'- -CGCGGGCCGCG---ACGCGagCGA--CCU---CC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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