miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11098 3' -55.3 NC_002794.1 + 44710 0.66 0.963304
Target:  5'- gGcCGCGacCGCGGCgacgUCggCCGGCGCc -3'
miRNA:   3'- gCaGUGC--GCGCUGa---AGaaGGUCGCGu -5'
11098 3' -55.3 NC_002794.1 + 72940 0.66 0.961268
Target:  5'- gCGUC-CGCGCGcccaccgggcccauCUUCUUCCGGUa-- -3'
miRNA:   3'- -GCAGuGCGCGCu-------------GAAGAAGGUCGcgu -5'
11098 3' -55.3 NC_002794.1 + 83180 0.66 0.959868
Target:  5'- gGUCGaGCGCGGCUUCg-CCAucaacaacGCGCc -3'
miRNA:   3'- gCAGUgCGCGCUGAAGaaGGU--------CGCGu -5'
11098 3' -55.3 NC_002794.1 + 145194 0.66 0.959868
Target:  5'- gGUCGC-CGCGGCggCccUCCGGCaGCGc -3'
miRNA:   3'- gCAGUGcGCGCUGaaGa-AGGUCG-CGU- -5'
11098 3' -55.3 NC_002794.1 + 122689 0.66 0.959868
Target:  5'- gGUCGCGCcagcgccggGCGACg--UUCguGCGCGu -3'
miRNA:   3'- gCAGUGCG---------CGCUGaagAAGguCGCGU- -5'
11098 3' -55.3 NC_002794.1 + 13123 0.66 0.956218
Target:  5'- gGUCGcCGCGCGGCUcg--CUcGCGCGg -3'
miRNA:   3'- gCAGU-GCGCGCUGAagaaGGuCGCGU- -5'
11098 3' -55.3 NC_002794.1 + 77005 0.66 0.952348
Target:  5'- cCGUCAC-CGgGAUgccg-CCGGCGCAc -3'
miRNA:   3'- -GCAGUGcGCgCUGaagaaGGUCGCGU- -5'
11098 3' -55.3 NC_002794.1 + 34243 0.66 0.952348
Target:  5'- uG-CACGCGCGGCUg---CCGcCGCAg -3'
miRNA:   3'- gCaGUGCGCGCUGAagaaGGUcGCGU- -5'
11098 3' -55.3 NC_002794.1 + 12544 0.66 0.948254
Target:  5'- --aCGCgGCGCGcACggCUaCCGGCGCAu -3'
miRNA:   3'- gcaGUG-CGCGC-UGaaGAaGGUCGCGU- -5'
11098 3' -55.3 NC_002794.1 + 147004 0.66 0.943934
Target:  5'- aCGUCgGCG-GCGGCggCcgCCGGCGCu -3'
miRNA:   3'- -GCAG-UGCgCGCUGaaGaaGGUCGCGu -5'
11098 3' -55.3 NC_002794.1 + 92991 0.66 0.943934
Target:  5'- cCGUCA---GCGugUUCUUCaAGCGCGa -3'
miRNA:   3'- -GCAGUgcgCGCugAAGAAGgUCGCGU- -5'
11098 3' -55.3 NC_002794.1 + 102048 0.67 0.939385
Target:  5'- gCGUUccuCGCGCG-CUUCUUCgAGCcggGCGa -3'
miRNA:   3'- -GCAGu--GCGCGCuGAAGAAGgUCG---CGU- -5'
11098 3' -55.3 NC_002794.1 + 77064 0.67 0.939385
Target:  5'- gCGUCcCGCuuucuGCacGCUcUCUUCCAGCGCGc -3'
miRNA:   3'- -GCAGuGCG-----CGc-UGA-AGAAGGUCGCGU- -5'
11098 3' -55.3 NC_002794.1 + 82617 0.67 0.939385
Target:  5'- aGUCACggaacuGCGCGaACUcaUCcgCCGGCGCc -3'
miRNA:   3'- gCAGUG------CGCGC-UGA--AGaaGGUCGCGu -5'
11098 3' -55.3 NC_002794.1 + 138138 0.67 0.934605
Target:  5'- gGUCuCGgGCGGCggUUUCUuGCGCAg -3'
miRNA:   3'- gCAGuGCgCGCUGaaGAAGGuCGCGU- -5'
11098 3' -55.3 NC_002794.1 + 143188 0.67 0.934605
Target:  5'- gGUUcucgACGUGCaGCUUCUcgcggucCCAGCGCAg -3'
miRNA:   3'- gCAG----UGCGCGcUGAAGAa------GGUCGCGU- -5'
11098 3' -55.3 NC_002794.1 + 50571 0.67 0.924349
Target:  5'- uGUCGacacggcgUGCGCGGCggCUggguggCCGGCGCc -3'
miRNA:   3'- gCAGU--------GCGCGCUGaaGAa-----GGUCGCGu -5'
11098 3' -55.3 NC_002794.1 + 58556 0.67 0.92273
Target:  5'- gCGcugCugGCGCGcugcgcgaacgccuACUUCcaCCAGCGCGg -3'
miRNA:   3'- -GCa--GugCGCGC--------------UGAAGaaGGUCGCGU- -5'
11098 3' -55.3 NC_002794.1 + 44574 0.67 0.91943
Target:  5'- aCGUCACGCGgGACcgagccaccgccgcCUUCUugGGCGCc -3'
miRNA:   3'- -GCAGUGCGCgCUGaa------------GAAGG--UCGCGu -5'
11098 3' -55.3 NC_002794.1 + 120852 0.67 0.918871
Target:  5'- ----cUGCGCGGCcgUCgUCCAGCGCc -3'
miRNA:   3'- gcaguGCGCGCUGa-AGaAGGUCGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.