miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11098 3' -55.3 NC_002794.1 + 102048 0.67 0.939385
Target:  5'- gCGUUccuCGCGCG-CUUCUUCgAGCcggGCGa -3'
miRNA:   3'- -GCAGu--GCGCGCuGAAGAAGgUCG---CGU- -5'
11098 3' -55.3 NC_002794.1 + 77064 0.67 0.939385
Target:  5'- gCGUCcCGCuuucuGCacGCUcUCUUCCAGCGCGc -3'
miRNA:   3'- -GCAGuGCG-----CGc-UGA-AGAAGGUCGCGU- -5'
11098 3' -55.3 NC_002794.1 + 50571 0.67 0.924349
Target:  5'- uGUCGacacggcgUGCGCGGCggCUggguggCCGGCGCc -3'
miRNA:   3'- gCAGU--------GCGCGCUGaaGAa-----GGUCGCGu -5'
11098 3' -55.3 NC_002794.1 + 82617 0.67 0.939385
Target:  5'- aGUCACggaacuGCGCGaACUcaUCcgCCGGCGCc -3'
miRNA:   3'- gCAGUG------CGCGC-UGA--AGaaGGUCGCGu -5'
11098 3' -55.3 NC_002794.1 + 143188 0.67 0.934605
Target:  5'- gGUUcucgACGUGCaGCUUCUcgcggucCCAGCGCAg -3'
miRNA:   3'- gCAG----UGCGCGcUGAAGAa------GGUCGCGU- -5'
11098 3' -55.3 NC_002794.1 + 138138 0.67 0.934605
Target:  5'- gGUCuCGgGCGGCggUUUCUuGCGCAg -3'
miRNA:   3'- gCAGuGCgCGCUGaaGAAGGuCGCGU- -5'
11098 3' -55.3 NC_002794.1 + 58556 0.67 0.92273
Target:  5'- gCGcugCugGCGCGcugcgcgaacgccuACUUCcaCCAGCGCGg -3'
miRNA:   3'- -GCa--GugCGCGC--------------UGAAGaaGGUCGCGU- -5'
11098 3' -55.3 NC_002794.1 + 194283 0.68 0.881201
Target:  5'- aCGgCGCGCGCcACguccagUCgUCCAGCGCc -3'
miRNA:   3'- -GCaGUGCGCGcUGa-----AGaAGGUCGCGu -5'
11098 3' -55.3 NC_002794.1 + 14716 0.68 0.894658
Target:  5'- gCGcUGCuCGCGGCUUCggcucggggUCCGGCGCGu -3'
miRNA:   3'- -GCaGUGcGCGCUGAAGa--------AGGUCGCGU- -5'
11098 3' -55.3 NC_002794.1 + 192413 0.68 0.894658
Target:  5'- aGUCgaaACGcCGCGACgggUCcgcggCCGGCGCGu -3'
miRNA:   3'- gCAG---UGC-GCGCUGa--AGaa---GGUCGCGU- -5'
11098 3' -55.3 NC_002794.1 + 73506 0.68 0.894658
Target:  5'- -uUCACGCcCGACUUCUUCguGCu-- -3'
miRNA:   3'- gcAGUGCGcGCUGAAGAAGguCGcgu -5'
11098 3' -55.3 NC_002794.1 + 65955 0.68 0.894658
Target:  5'- uCGUCGCGaGCGGCggcgUCUccUCCGGCa-- -3'
miRNA:   3'- -GCAGUGCgCGCUGa---AGA--AGGUCGcgu -5'
11098 3' -55.3 NC_002794.1 + 61883 0.68 0.894658
Target:  5'- uCGUCGgcgcCGCGCGGCgagcgCggCgAGCGCAg -3'
miRNA:   3'- -GCAGU----GCGCGCUGaa---GaaGgUCGCGU- -5'
11098 3' -55.3 NC_002794.1 + 15268 0.68 0.894658
Target:  5'- cCGUCGgcgagcCGCGCGGCUcCcUCC-GCGCGa -3'
miRNA:   3'- -GCAGU------GCGCGCUGAaGaAGGuCGCGU- -5'
11098 3' -55.3 NC_002794.1 + 119657 0.68 0.901053
Target:  5'- gGUCA-GCGUGACcUCgaccUCCGGCGUc -3'
miRNA:   3'- gCAGUgCGCGCUGaAGa---AGGUCGCGu -5'
11098 3' -55.3 NC_002794.1 + 101425 0.68 0.905395
Target:  5'- aCGUgGCuGCGCGACgauccggggacgCCGGCGCGc -3'
miRNA:   3'- -GCAgUG-CGCGCUGaagaa-------GGUCGCGU- -5'
11098 3' -55.3 NC_002794.1 + 140649 0.68 0.906615
Target:  5'- aCGUCgugggcuGCGCGCaGCUUUUgggUCgGGCGCAg -3'
miRNA:   3'- -GCAG-------UGCGCGcUGAAGA---AGgUCGCGU- -5'
11098 3' -55.3 NC_002794.1 + 82137 0.68 0.909626
Target:  5'- gCGUCACGUGggcggacacccggccCGACggC-UCCGGCGCc -3'
miRNA:   3'- -GCAGUGCGC---------------GCUGaaGaAGGUCGCGu -5'
11098 3' -55.3 NC_002794.1 + 193816 0.69 0.866882
Target:  5'- uCGUCugGCGcCGACgcg-UCgCGGCGCc -3'
miRNA:   3'- -GCAGugCGC-GCUGaagaAG-GUCGCGu -5'
11098 3' -55.3 NC_002794.1 + 122620 0.69 0.859412
Target:  5'- aCGUCACGCGCGGCUaCgggCA-CGCGg -3'
miRNA:   3'- -GCAGUGCGCGCUGAaGaagGUcGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.