Results 41 - 48 of 48 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
|
P value |
| Predicted miRNA align pattern | |||||||
| 11098 | 3' | -55.3 | NC_002794.1 | + | 122620 | 0.69 | 0.859412 |
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Target: 5'- aCGUCACGCGCGGCUaCgggCA-CGCGg -3' miRNA: 3'- -GCAGUGCGCGCUGAaGaagGUcGCGU- -5' |
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| 11098 | 3' | -55.3 | NC_002794.1 | + | 193816 | 0.69 | 0.866882 |
|
Target: 5'- uCGUCugGCGcCGACgcg-UCgCGGCGCc -3' miRNA: 3'- -GCAGugCGC-GCUGaagaAG-GUCGCGu -5' |
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| 11098 | 3' | -55.3 | NC_002794.1 | + | 49015 | 0.69 | 0.866882 |
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Target: 5'- gCGcCGCGgcggcCGCGGCgUCgUCCGGCGCGg -3' miRNA: 3'- -GCaGUGC-----GCGCUGaAGaAGGUCGCGU- -5' |
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| 11098 | 3' | -55.3 | NC_002794.1 | + | 57481 | 0.7 | 0.827595 |
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Target: 5'- uCGUCACGCGCGACcaggUgCGcGCGCc -3' miRNA: 3'- -GCAGUGCGCGCUGaagaAgGU-CGCGu -5' |
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| 11098 | 3' | -55.3 | NC_002794.1 | + | 80508 | 0.71 | 0.765571 |
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Target: 5'- aCGUCuucugcgccgcgGCGCGCGACgcCUggcaCCGGCGCc -3' miRNA: 3'- -GCAG------------UGCGCGCUGaaGAa---GGUCGCGu -5' |
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| 11098 | 3' | -55.3 | NC_002794.1 | + | 112627 | 0.71 | 0.774847 |
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Target: 5'- uCGUcCACGgGCGGCUUC-UCgAGCaGCAg -3' miRNA: 3'- -GCA-GUGCgCGCUGAAGaAGgUCG-CGU- -5' |
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| 11098 | 3' | -55.3 | NC_002794.1 | + | 59153 | 0.71 | 0.765571 |
|
Target: 5'- gCGUCGCGCaCGACacgCUgCUGGCGCAg -3' miRNA: 3'- -GCAGUGCGcGCUGaa-GAaGGUCGCGU- -5' |
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| 11098 | 3' | -55.3 | NC_002794.1 | + | 32574 | 0.74 | 0.617497 |
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Target: 5'- aGUCGCGCGCGGCggug-CCGGgGCc -3' miRNA: 3'- gCAGUGCGCGCUGaagaaGGUCgCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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