miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11098 3' -55.3 NC_002794.1 + 32574 0.74 0.617497
Target:  5'- aGUCGCGCGCGGCggug-CCGGgGCc -3'
miRNA:   3'- gCAGUGCGCGCUGaagaaGGUCgCGu -5'
11098 3' -55.3 NC_002794.1 + 59153 0.71 0.765571
Target:  5'- gCGUCGCGCaCGACacgCUgCUGGCGCAg -3'
miRNA:   3'- -GCAGUGCGcGCUGaa-GAaGGUCGCGU- -5'
11098 3' -55.3 NC_002794.1 + 112627 0.71 0.774847
Target:  5'- uCGUcCACGgGCGGCUUC-UCgAGCaGCAg -3'
miRNA:   3'- -GCA-GUGCgCGCUGAAGaAGgUCG-CGU- -5'
11098 3' -55.3 NC_002794.1 + 80508 0.71 0.765571
Target:  5'- aCGUCuucugcgccgcgGCGCGCGACgcCUggcaCCGGCGCc -3'
miRNA:   3'- -GCAG------------UGCGCGCUGaaGAa---GGUCGCGu -5'
11098 3' -55.3 NC_002794.1 + 57481 0.7 0.827595
Target:  5'- uCGUCACGCGCGACcaggUgCGcGCGCc -3'
miRNA:   3'- -GCAGUGCGCGCUGaagaAgGU-CGCGu -5'
11098 3' -55.3 NC_002794.1 + 122620 0.69 0.859412
Target:  5'- aCGUCACGCGCGGCUaCgggCA-CGCGg -3'
miRNA:   3'- -GCAGUGCGCGCUGAaGaagGUcGCGU- -5'
11098 3' -55.3 NC_002794.1 + 96398 0.69 0.850964
Target:  5'- gGUCGCGCcuuaccgGCG-CUUCUUCgaucuCGGCGCGg -3'
miRNA:   3'- gCAGUGCG-------CGCuGAAGAAG-----GUCGCGU- -5'
11098 3' -55.3 NC_002794.1 + 193816 0.69 0.866882
Target:  5'- uCGUCugGCGcCGACgcg-UCgCGGCGCc -3'
miRNA:   3'- -GCAGugCGC-GCUGaagaAG-GUCGCGu -5'
11098 3' -55.3 NC_002794.1 + 49015 0.69 0.866882
Target:  5'- gCGcCGCGgcggcCGCGGCgUCgUCCGGCGCGg -3'
miRNA:   3'- -GCaGUGC-----GCGCUGaAGaAGGUCGCGU- -5'
11098 3' -55.3 NC_002794.1 + 188039 0.69 0.843878
Target:  5'- cCGUCccggACGCGgcgagucuCGACUUCggCCAGCGUc -3'
miRNA:   3'- -GCAG----UGCGC--------GCUGAAGaaGGUCGCGu -5'
11098 3' -55.3 NC_002794.1 + 192413 0.68 0.894658
Target:  5'- aGUCgaaACGcCGCGACgggUCcgcggCCGGCGCGu -3'
miRNA:   3'- gCAG---UGC-GCGCUGa--AGaa---GGUCGCGU- -5'
11098 3' -55.3 NC_002794.1 + 14716 0.68 0.894658
Target:  5'- gCGcUGCuCGCGGCUUCggcucggggUCCGGCGCGu -3'
miRNA:   3'- -GCaGUGcGCGCUGAAGa--------AGGUCGCGU- -5'
11098 3' -55.3 NC_002794.1 + 61883 0.68 0.894658
Target:  5'- uCGUCGgcgcCGCGCGGCgagcgCggCgAGCGCAg -3'
miRNA:   3'- -GCAGU----GCGCGCUGaa---GaaGgUCGCGU- -5'
11098 3' -55.3 NC_002794.1 + 194283 0.68 0.881201
Target:  5'- aCGgCGCGCGCcACguccagUCgUCCAGCGCc -3'
miRNA:   3'- -GCaGUGCGCGcUGa-----AGaAGGUCGCGu -5'
11098 3' -55.3 NC_002794.1 + 140649 0.68 0.906615
Target:  5'- aCGUCgugggcuGCGCGCaGCUUUUgggUCgGGCGCAg -3'
miRNA:   3'- -GCAG-------UGCGCGcUGAAGA---AGgUCGCGU- -5'
11098 3' -55.3 NC_002794.1 + 82137 0.68 0.909626
Target:  5'- gCGUCACGUGggcggacacccggccCGACggC-UCCGGCGCc -3'
miRNA:   3'- -GCAGUGCGC---------------GCUGaaGaAGGUCGCGu -5'
11098 3' -55.3 NC_002794.1 + 15268 0.68 0.894658
Target:  5'- cCGUCGgcgagcCGCGCGGCUcCcUCC-GCGCGa -3'
miRNA:   3'- -GCAGU------GCGCGCUGAaGaAGGuCGCGU- -5'
11098 3' -55.3 NC_002794.1 + 119657 0.68 0.901053
Target:  5'- gGUCA-GCGUGACcUCgaccUCCGGCGUc -3'
miRNA:   3'- gCAGUgCGCGCUGaAGa---AGGUCGCGu -5'
11098 3' -55.3 NC_002794.1 + 73506 0.68 0.894658
Target:  5'- -uUCACGCcCGACUUCUUCguGCu-- -3'
miRNA:   3'- gcAGUGCGcGCUGAAGAAGguCGcgu -5'
11098 3' -55.3 NC_002794.1 + 101425 0.68 0.905395
Target:  5'- aCGUgGCuGCGCGACgauccggggacgCCGGCGCGc -3'
miRNA:   3'- -GCAgUG-CGCGCUGaagaa-------GGUCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.