miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11098 3' -55.3 NC_002794.1 + 119657 0.68 0.901053
Target:  5'- gGUCA-GCGUGACcUCgaccUCCGGCGUc -3'
miRNA:   3'- gCAGUgCGCGCUGaAGa---AGGUCGCGu -5'
11098 3' -55.3 NC_002794.1 + 187941 0.67 0.913162
Target:  5'- gCGUCACGCGUGcGCgcg--CgAGCGCGg -3'
miRNA:   3'- -GCAGUGCGCGC-UGaagaaGgUCGCGU- -5'
11098 3' -55.3 NC_002794.1 + 78099 0.67 0.918871
Target:  5'- cCGUCGCGaaaCGCGGCggCgccUCCAGaCGCc -3'
miRNA:   3'- -GCAGUGC---GCGCUGaaGa--AGGUC-GCGu -5'
11098 3' -55.3 NC_002794.1 + 194784 0.67 0.913162
Target:  5'- cCGgCACGCGCGcaGCggCUcCCAGUGCc -3'
miRNA:   3'- -GCaGUGCGCGC--UGaaGAaGGUCGCGu -5'
11098 3' -55.3 NC_002794.1 + 134380 0.67 0.913162
Target:  5'- uCGUUucgacCGCgGCGAUUUCggcaUCCGGCGCc -3'
miRNA:   3'- -GCAGu----GCG-CGCUGAAGa---AGGUCGCGu -5'
11098 3' -55.3 NC_002794.1 + 102048 0.67 0.939385
Target:  5'- gCGUUccuCGCGCG-CUUCUUCgAGCcggGCGa -3'
miRNA:   3'- -GCAGu--GCGCGCuGAAGAAGgUCG---CGU- -5'
11098 3' -55.3 NC_002794.1 + 77064 0.67 0.939385
Target:  5'- gCGUCcCGCuuucuGCacGCUcUCUUCCAGCGCGc -3'
miRNA:   3'- -GCAGuGCG-----CGc-UGA-AGAAGGUCGCGU- -5'
11098 3' -55.3 NC_002794.1 + 50571 0.67 0.924349
Target:  5'- uGUCGacacggcgUGCGCGGCggCUggguggCCGGCGCc -3'
miRNA:   3'- gCAGU--------GCGCGCUGaaGAa-----GGUCGCGu -5'
11098 3' -55.3 NC_002794.1 + 82617 0.67 0.939385
Target:  5'- aGUCACggaacuGCGCGaACUcaUCcgCCGGCGCc -3'
miRNA:   3'- gCAGUG------CGCGC-UGA--AGaaGGUCGCGu -5'
11098 3' -55.3 NC_002794.1 + 143188 0.67 0.934605
Target:  5'- gGUUcucgACGUGCaGCUUCUcgcggucCCAGCGCAg -3'
miRNA:   3'- gCAG----UGCGCGcUGAAGAa------GGUCGCGU- -5'
11098 3' -55.3 NC_002794.1 + 138138 0.67 0.934605
Target:  5'- gGUCuCGgGCGGCggUUUCUuGCGCAg -3'
miRNA:   3'- gCAGuGCgCGCUGaaGAAGGuCGCGU- -5'
11098 3' -55.3 NC_002794.1 + 58556 0.67 0.92273
Target:  5'- gCGcugCugGCGCGcugcgcgaacgccuACUUCcaCCAGCGCGg -3'
miRNA:   3'- -GCa--GugCGCGC--------------UGAAGaaGGUCGCGU- -5'
11098 3' -55.3 NC_002794.1 + 25132 0.67 0.913162
Target:  5'- gCGgggCACGCGCGcACgguaggCCAGCGUg -3'
miRNA:   3'- -GCa--GUGCGCGC-UGaagaa-GGUCGCGu -5'
11098 3' -55.3 NC_002794.1 + 90470 0.67 0.918871
Target:  5'- gGcCGCGCGCGGCggggccgCcgUCCcGCGCGa -3'
miRNA:   3'- gCaGUGCGCGCUGaa-----Ga-AGGuCGCGU- -5'
11098 3' -55.3 NC_002794.1 + 120852 0.67 0.918871
Target:  5'- ----cUGCGCGGCcgUCgUCCAGCGCc -3'
miRNA:   3'- gcaguGCGCGCUGa-AGaAGGUCGCGu -5'
11098 3' -55.3 NC_002794.1 + 44574 0.67 0.91943
Target:  5'- aCGUCACGCGgGACcgagccaccgccgcCUUCUugGGCGCc -3'
miRNA:   3'- -GCAGUGCGCgCUGaa------------GAAGG--UCGCGu -5'
11098 3' -55.3 NC_002794.1 + 129054 0.67 0.918871
Target:  5'- uCGUgGCGCGCGACggugugUCgcggCUGGCgGCGg -3'
miRNA:   3'- -GCAgUGCGCGCUGa-----AGaa--GGUCG-CGU- -5'
11098 3' -55.3 NC_002794.1 + 13123 0.66 0.956218
Target:  5'- gGUCGcCGCGCGGCUcg--CUcGCGCGg -3'
miRNA:   3'- gCAGU-GCGCGCUGAagaaGGuCGCGU- -5'
11098 3' -55.3 NC_002794.1 + 147004 0.66 0.943934
Target:  5'- aCGUCgGCG-GCGGCggCcgCCGGCGCu -3'
miRNA:   3'- -GCAG-UGCgCGCUGaaGaaGGUCGCGu -5'
11098 3' -55.3 NC_002794.1 + 77005 0.66 0.952348
Target:  5'- cCGUCAC-CGgGAUgccg-CCGGCGCAc -3'
miRNA:   3'- -GCAGUGcGCgCUGaagaaGGUCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.