miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11098 3' -55.3 NC_002794.1 + 78099 0.67 0.918871
Target:  5'- cCGUCGCGaaaCGCGGCggCgccUCCAGaCGCc -3'
miRNA:   3'- -GCAGUGC---GCGCUGaaGa--AGGUC-GCGu -5'
11098 3' -55.3 NC_002794.1 + 80508 0.71 0.765571
Target:  5'- aCGUCuucugcgccgcgGCGCGCGACgcCUggcaCCGGCGCc -3'
miRNA:   3'- -GCAG------------UGCGCGCUGaaGAa---GGUCGCGu -5'
11098 3' -55.3 NC_002794.1 + 82137 0.68 0.909626
Target:  5'- gCGUCACGUGggcggacacccggccCGACggC-UCCGGCGCc -3'
miRNA:   3'- -GCAGUGCGC---------------GCUGaaGaAGGUCGCGu -5'
11098 3' -55.3 NC_002794.1 + 82617 0.67 0.939385
Target:  5'- aGUCACggaacuGCGCGaACUcaUCcgCCGGCGCc -3'
miRNA:   3'- gCAGUG------CGCGC-UGA--AGaaGGUCGCGu -5'
11098 3' -55.3 NC_002794.1 + 83180 0.66 0.959868
Target:  5'- gGUCGaGCGCGGCUUCg-CCAucaacaacGCGCc -3'
miRNA:   3'- gCAGUgCGCGCUGAAGaaGGU--------CGCGu -5'
11098 3' -55.3 NC_002794.1 + 90470 0.67 0.918871
Target:  5'- gGcCGCGCGCGGCggggccgCcgUCCcGCGCGa -3'
miRNA:   3'- gCaGUGCGCGCUGaa-----Ga-AGGuCGCGU- -5'
11098 3' -55.3 NC_002794.1 + 92991 0.66 0.943934
Target:  5'- cCGUCA---GCGugUUCUUCaAGCGCGa -3'
miRNA:   3'- -GCAGUgcgCGCugAAGAAGgUCGCGU- -5'
11098 3' -55.3 NC_002794.1 + 96398 0.69 0.850964
Target:  5'- gGUCGCGCcuuaccgGCG-CUUCUUCgaucuCGGCGCGg -3'
miRNA:   3'- gCAGUGCG-------CGCuGAAGAAG-----GUCGCGU- -5'
11098 3' -55.3 NC_002794.1 + 101425 0.68 0.905395
Target:  5'- aCGUgGCuGCGCGACgauccggggacgCCGGCGCGc -3'
miRNA:   3'- -GCAgUG-CGCGCUGaagaa-------GGUCGCGU- -5'
11098 3' -55.3 NC_002794.1 + 102048 0.67 0.939385
Target:  5'- gCGUUccuCGCGCG-CUUCUUCgAGCcggGCGa -3'
miRNA:   3'- -GCAGu--GCGCGCuGAAGAAGgUCG---CGU- -5'
11098 3' -55.3 NC_002794.1 + 112627 0.71 0.774847
Target:  5'- uCGUcCACGgGCGGCUUC-UCgAGCaGCAg -3'
miRNA:   3'- -GCA-GUGCgCGCUGAAGaAGgUCG-CGU- -5'
11098 3' -55.3 NC_002794.1 + 119657 0.68 0.901053
Target:  5'- gGUCA-GCGUGACcUCgaccUCCGGCGUc -3'
miRNA:   3'- gCAGUgCGCGCUGaAGa---AGGUCGCGu -5'
11098 3' -55.3 NC_002794.1 + 120852 0.67 0.918871
Target:  5'- ----cUGCGCGGCcgUCgUCCAGCGCc -3'
miRNA:   3'- gcaguGCGCGCUGa-AGaAGGUCGCGu -5'
11098 3' -55.3 NC_002794.1 + 122620 0.69 0.859412
Target:  5'- aCGUCACGCGCGGCUaCgggCA-CGCGg -3'
miRNA:   3'- -GCAGUGCGCGCUGAaGaagGUcGCGU- -5'
11098 3' -55.3 NC_002794.1 + 122689 0.66 0.959868
Target:  5'- gGUCGCGCcagcgccggGCGACg--UUCguGCGCGu -3'
miRNA:   3'- gCAGUGCG---------CGCUGaagAAGguCGCGU- -5'
11098 3' -55.3 NC_002794.1 + 129054 0.67 0.918871
Target:  5'- uCGUgGCGCGCGACggugugUCgcggCUGGCgGCGg -3'
miRNA:   3'- -GCAgUGCGCGCUGa-----AGaa--GGUCG-CGU- -5'
11098 3' -55.3 NC_002794.1 + 134380 0.67 0.913162
Target:  5'- uCGUUucgacCGCgGCGAUUUCggcaUCCGGCGCc -3'
miRNA:   3'- -GCAGu----GCG-CGCUGAAGa---AGGUCGCGu -5'
11098 3' -55.3 NC_002794.1 + 138138 0.67 0.934605
Target:  5'- gGUCuCGgGCGGCggUUUCUuGCGCAg -3'
miRNA:   3'- gCAGuGCgCGCUGaaGAAGGuCGCGU- -5'
11098 3' -55.3 NC_002794.1 + 140649 0.68 0.906615
Target:  5'- aCGUCgugggcuGCGCGCaGCUUUUgggUCgGGCGCAg -3'
miRNA:   3'- -GCAG-------UGCGCGcUGAAGA---AGgUCGCGU- -5'
11098 3' -55.3 NC_002794.1 + 143188 0.67 0.934605
Target:  5'- gGUUcucgACGUGCaGCUUCUcgcggucCCAGCGCAg -3'
miRNA:   3'- gCAG----UGCGCGcUGAAGAa------GGUCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.