miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11098 3' -55.3 NC_002794.1 + 96398 0.69 0.850964
Target:  5'- gGUCGCGCcuuaccgGCG-CUUCUUCgaucuCGGCGCGg -3'
miRNA:   3'- gCAGUGCG-------CGCuGAAGAAG-----GUCGCGU- -5'
11098 3' -55.3 NC_002794.1 + 92991 0.66 0.943934
Target:  5'- cCGUCA---GCGugUUCUUCaAGCGCGa -3'
miRNA:   3'- -GCAGUgcgCGCugAAGAAGgUCGCGU- -5'
11098 3' -55.3 NC_002794.1 + 90470 0.67 0.918871
Target:  5'- gGcCGCGCGCGGCggggccgCcgUCCcGCGCGa -3'
miRNA:   3'- gCaGUGCGCGCUGaa-----Ga-AGGuCGCGU- -5'
11098 3' -55.3 NC_002794.1 + 83180 0.66 0.959868
Target:  5'- gGUCGaGCGCGGCUUCg-CCAucaacaacGCGCc -3'
miRNA:   3'- gCAGUgCGCGCUGAAGaaGGU--------CGCGu -5'
11098 3' -55.3 NC_002794.1 + 82617 0.67 0.939385
Target:  5'- aGUCACggaacuGCGCGaACUcaUCcgCCGGCGCc -3'
miRNA:   3'- gCAGUG------CGCGC-UGA--AGaaGGUCGCGu -5'
11098 3' -55.3 NC_002794.1 + 82137 0.68 0.909626
Target:  5'- gCGUCACGUGggcggacacccggccCGACggC-UCCGGCGCc -3'
miRNA:   3'- -GCAGUGCGC---------------GCUGaaGaAGGUCGCGu -5'
11098 3' -55.3 NC_002794.1 + 80508 0.71 0.765571
Target:  5'- aCGUCuucugcgccgcgGCGCGCGACgcCUggcaCCGGCGCc -3'
miRNA:   3'- -GCAG------------UGCGCGCUGaaGAa---GGUCGCGu -5'
11098 3' -55.3 NC_002794.1 + 78099 0.67 0.918871
Target:  5'- cCGUCGCGaaaCGCGGCggCgccUCCAGaCGCc -3'
miRNA:   3'- -GCAGUGC---GCGCUGaaGa--AGGUC-GCGu -5'
11098 3' -55.3 NC_002794.1 + 77064 0.67 0.939385
Target:  5'- gCGUCcCGCuuucuGCacGCUcUCUUCCAGCGCGc -3'
miRNA:   3'- -GCAGuGCG-----CGc-UGA-AGAAGGUCGCGU- -5'
11098 3' -55.3 NC_002794.1 + 77005 0.66 0.952348
Target:  5'- cCGUCAC-CGgGAUgccg-CCGGCGCAc -3'
miRNA:   3'- -GCAGUGcGCgCUGaagaaGGUCGCGU- -5'
11098 3' -55.3 NC_002794.1 + 73506 0.68 0.894658
Target:  5'- -uUCACGCcCGACUUCUUCguGCu-- -3'
miRNA:   3'- gcAGUGCGcGCUGAAGAAGguCGcgu -5'
11098 3' -55.3 NC_002794.1 + 72940 0.66 0.961268
Target:  5'- gCGUC-CGCGCGcccaccgggcccauCUUCUUCCGGUa-- -3'
miRNA:   3'- -GCAGuGCGCGCu-------------GAAGAAGGUCGcgu -5'
11098 3' -55.3 NC_002794.1 + 65955 0.68 0.894658
Target:  5'- uCGUCGCGaGCGGCggcgUCUccUCCGGCa-- -3'
miRNA:   3'- -GCAGUGCgCGCUGa---AGA--AGGUCGcgu -5'
11098 3' -55.3 NC_002794.1 + 61883 0.68 0.894658
Target:  5'- uCGUCGgcgcCGCGCGGCgagcgCggCgAGCGCAg -3'
miRNA:   3'- -GCAGU----GCGCGCUGaa---GaaGgUCGCGU- -5'
11098 3' -55.3 NC_002794.1 + 59153 0.71 0.765571
Target:  5'- gCGUCGCGCaCGACacgCUgCUGGCGCAg -3'
miRNA:   3'- -GCAGUGCGcGCUGaa-GAaGGUCGCGU- -5'
11098 3' -55.3 NC_002794.1 + 58556 0.67 0.92273
Target:  5'- gCGcugCugGCGCGcugcgcgaacgccuACUUCcaCCAGCGCGg -3'
miRNA:   3'- -GCa--GugCGCGC--------------UGAAGaaGGUCGCGU- -5'
11098 3' -55.3 NC_002794.1 + 57481 0.7 0.827595
Target:  5'- uCGUCACGCGCGACcaggUgCGcGCGCc -3'
miRNA:   3'- -GCAGUGCGCGCUGaagaAgGU-CGCGu -5'
11098 3' -55.3 NC_002794.1 + 50571 0.67 0.924349
Target:  5'- uGUCGacacggcgUGCGCGGCggCUggguggCCGGCGCc -3'
miRNA:   3'- gCAGU--------GCGCGCUGaaGAa-----GGUCGCGu -5'
11098 3' -55.3 NC_002794.1 + 49015 0.69 0.866882
Target:  5'- gCGcCGCGgcggcCGCGGCgUCgUCCGGCGCGg -3'
miRNA:   3'- -GCaGUGC-----GCGCUGaAGaAGGUCGCGU- -5'
11098 3' -55.3 NC_002794.1 + 44710 0.66 0.963304
Target:  5'- gGcCGCGacCGCGGCgacgUCggCCGGCGCc -3'
miRNA:   3'- gCaGUGC--GCGCUGa---AGaaGGUCGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.