miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11098 5' -59.1 NC_002794.1 + 91128 0.66 0.84211
Target:  5'- gCCguGCGuGG-AGGAGGCGCggacggugcugcuggGCGCCGUGg -3'
miRNA:   3'- aGG--UGC-CCgUCUUCCGCG---------------CGUGGUAC- -5'
11098 5' -59.1 NC_002794.1 + 185470 0.66 0.838952
Target:  5'- gCCGCGGGCGGc-GGC-CGCGgCGa- -3'
miRNA:   3'- aGGUGCCCGUCuuCCGcGCGUgGUac -5'
11098 5' -59.1 NC_002794.1 + 52165 0.66 0.838952
Target:  5'- aCCAgGcGGCGGc-GGUGCGCAUCGc- -3'
miRNA:   3'- aGGUgC-CCGUCuuCCGCGCGUGGUac -5'
11098 5' -59.1 NC_002794.1 + 92968 0.66 0.838952
Target:  5'- cCCGCGcGGCGGcAAGGgGCuGC-CCGUc -3'
miRNA:   3'- aGGUGC-CCGUC-UUCCgCG-CGuGGUAc -5'
11098 5' -59.1 NC_002794.1 + 8631 0.66 0.838952
Target:  5'- --aGCGcGGUGGAAGacGUGCGCGCCAa- -3'
miRNA:   3'- aggUGC-CCGUCUUC--CGCGCGUGGUac -5'
11098 5' -59.1 NC_002794.1 + 62501 0.66 0.838952
Target:  5'- aCgGCGGGCGGcgccgccGGCGCcuccgccCACCGUGa -3'
miRNA:   3'- aGgUGCCCGUCuu-----CCGCGc------GUGGUAC- -5'
11098 5' -59.1 NC_002794.1 + 26666 0.66 0.838952
Target:  5'- gUCgGCGGGguGGA-GCGC-CACCGa- -3'
miRNA:   3'- -AGgUGCCCguCUUcCGCGcGUGGUac -5'
11098 5' -59.1 NC_002794.1 + 42582 0.66 0.830933
Target:  5'- cCCGCGGacggaGGAGGGCGCgGCgGCCGg- -3'
miRNA:   3'- aGGUGCCcg---UCUUCCGCG-CG-UGGUac -5'
11098 5' -59.1 NC_002794.1 + 1086 0.66 0.830933
Target:  5'- uUUCG-GGGCguccugAGGAGGCGUGCccauCCGUGg -3'
miRNA:   3'- -AGGUgCCCG------UCUUCCGCGCGu---GGUAC- -5'
11098 5' -59.1 NC_002794.1 + 117665 0.66 0.830933
Target:  5'- gCCACGcGCGGc-GGCGCGUACUg-- -3'
miRNA:   3'- aGGUGCcCGUCuuCCGCGCGUGGuac -5'
11098 5' -59.1 NC_002794.1 + 32870 0.66 0.822744
Target:  5'- cCgGCGGGCGGcggcggcggcGGCG-GCAUCAUGg -3'
miRNA:   3'- aGgUGCCCGUCuu--------CCGCgCGUGGUAC- -5'
11098 5' -59.1 NC_002794.1 + 113172 0.66 0.822744
Target:  5'- -gCGCGGGCGGcggcggucgcgGAGGCGCcucCGCCGc- -3'
miRNA:   3'- agGUGCCCGUC-----------UUCCGCGc--GUGGUac -5'
11098 5' -59.1 NC_002794.1 + 141527 0.66 0.822744
Target:  5'- gCCuggGCGGGCugcucgccGAAGGCGCGaaucCGCCAc- -3'
miRNA:   3'- aGG---UGCCCGu-------CUUCCGCGC----GUGGUac -5'
11098 5' -59.1 NC_002794.1 + 176542 0.66 0.822744
Target:  5'- gUCCcuuUGGGCGacgcGGCgGUGCACCAUGu -3'
miRNA:   3'- -AGGu--GCCCGUcuu-CCG-CGCGUGGUAC- -5'
11098 5' -59.1 NC_002794.1 + 143072 0.66 0.814393
Target:  5'- cCCGCGgcGGCAGAcguaguggAGGuUGCGCGgCGUGu -3'
miRNA:   3'- aGGUGC--CCGUCU--------UCC-GCGCGUgGUAC- -5'
11098 5' -59.1 NC_002794.1 + 139491 0.66 0.814393
Target:  5'- --gAUGGGCGc-GGGCGCGCugCAg- -3'
miRNA:   3'- aggUGCCCGUcuUCCGCGCGugGUac -5'
11098 5' -59.1 NC_002794.1 + 91996 0.66 0.814393
Target:  5'- -aCACgGGGCAGAAcggcGGCaGCGCGCUc-- -3'
miRNA:   3'- agGUG-CCCGUCUU----CCG-CGCGUGGuac -5'
11098 5' -59.1 NC_002794.1 + 81232 0.66 0.814393
Target:  5'- cCCcCGGGCcGc--GCGCGCACCAc- -3'
miRNA:   3'- aGGuGCCCGuCuucCGCGCGUGGUac -5'
11098 5' -59.1 NC_002794.1 + 71229 0.66 0.805886
Target:  5'- gCCGCGuaguGGCGGccGGCGUGgACCGg- -3'
miRNA:   3'- aGGUGC----CCGUCuuCCGCGCgUGGUac -5'
11098 5' -59.1 NC_002794.1 + 194337 0.66 0.805886
Target:  5'- gCCACGGGCucuccgacGggGGCGCcaggaACCGc- -3'
miRNA:   3'- aGGUGCCCGu-------CuuCCGCGcg---UGGUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.