miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11098 5' -59.1 NC_002794.1 + 1086 0.66 0.830933
Target:  5'- uUUCG-GGGCguccugAGGAGGCGUGCccauCCGUGg -3'
miRNA:   3'- -AGGUgCCCG------UCUUCCGCGCGu---GGUAC- -5'
11098 5' -59.1 NC_002794.1 + 26666 0.66 0.838952
Target:  5'- gUCgGCGGGguGGA-GCGC-CACCGa- -3'
miRNA:   3'- -AGgUGCCCguCUUcCGCGcGUGGUac -5'
11098 5' -59.1 NC_002794.1 + 117665 0.66 0.830933
Target:  5'- gCCACGcGCGGc-GGCGCGUACUg-- -3'
miRNA:   3'- aGGUGCcCGUCuuCCGCGCGUGGuac -5'
11098 5' -59.1 NC_002794.1 + 186760 0.67 0.779509
Target:  5'- aCCAgGGGCAGGccAGGCGCuccgacacguaGCGCgCGa- -3'
miRNA:   3'- aGGUgCCCGUCU--UCCGCG-----------CGUG-GUac -5'
11098 5' -59.1 NC_002794.1 + 56383 0.67 0.770458
Target:  5'- aUCCACcGGCAcGGauugcgagAGGCGCGCAUCc-- -3'
miRNA:   3'- -AGGUGcCCGU-CU--------UCCGCGCGUGGuac -5'
11098 5' -59.1 NC_002794.1 + 191487 0.67 0.760368
Target:  5'- gCCACGGGCGaucguccgccaccGAgAGGUGCcaGCGCCGg- -3'
miRNA:   3'- aGGUGCCCGU-------------CU-UCCGCG--CGUGGUac -5'
11098 5' -59.1 NC_002794.1 + 80276 0.67 0.761291
Target:  5'- cUCaCACGGGUcaacgagcucguGGAGGGCGUcuucaGCcCCGUGg -3'
miRNA:   3'- -AG-GUGCCCG------------UCUUCCGCG-----CGuGGUAC- -5'
11098 5' -59.1 NC_002794.1 + 68940 0.67 0.761291
Target:  5'- cCCGCGGGCcgc-GGCGCcgGCGCCu-- -3'
miRNA:   3'- aGGUGCCCGucuuCCGCG--CGUGGuac -5'
11098 5' -59.1 NC_002794.1 + 103409 0.67 0.752016
Target:  5'- aCCAcguCGGGCAGcgccGCGUGCACgAUGu -3'
miRNA:   3'- aGGU---GCCCGUCuuc-CGCGCGUGgUAC- -5'
11098 5' -59.1 NC_002794.1 + 32059 0.67 0.751083
Target:  5'- cUCCACGGcguuguaaaaguaGUAGAAgaacacgacGGCGUGCAgCAUGu -3'
miRNA:   3'- -AGGUGCC-------------CGUCUU---------CCGCGCGUgGUAC- -5'
11098 5' -59.1 NC_002794.1 + 115049 0.67 0.770458
Target:  5'- -aC-CGGGCGGcGGGCGgcaGCGCCGUc -3'
miRNA:   3'- agGuGCCCGUCuUCCGCg--CGUGGUAc -5'
11098 5' -59.1 NC_002794.1 + 94411 0.67 0.770458
Target:  5'- aCCGCGGuGU--GGGGCGCGC-CCGa- -3'
miRNA:   3'- aGGUGCC-CGucUUCCGCGCGuGGUac -5'
11098 5' -59.1 NC_002794.1 + 158744 0.67 0.779509
Target:  5'- gCC-CGGGUAGu--GUGCGCGCaCGUGg -3'
miRNA:   3'- aGGuGCCCGUCuucCGCGCGUG-GUAC- -5'
11098 5' -59.1 NC_002794.1 + 101587 0.67 0.788436
Target:  5'- gCCGCGGccgGGggGGCGgGUGCCGg- -3'
miRNA:   3'- aGGUGCCcg-UCuuCCGCgCGUGGUac -5'
11098 5' -59.1 NC_002794.1 + 141424 0.67 0.788436
Target:  5'- cUCGgGGGCGGcgGGGGCGCcggggGCGCCGg- -3'
miRNA:   3'- aGGUgCCCGUC--UUCCGCG-----CGUGGUac -5'
11098 5' -59.1 NC_002794.1 + 122970 0.67 0.789322
Target:  5'- gCCugGGGUGGcuguacgcgcgccuGGUGCGgGCCGUGc -3'
miRNA:   3'- aGGugCCCGUCuu------------CCGCGCgUGGUAC- -5'
11098 5' -59.1 NC_002794.1 + 118248 0.67 0.797232
Target:  5'- gUCgGCGGGCuGGAGGUcggccggggcgGCgGCGCCGg- -3'
miRNA:   3'- -AGgUGCCCGuCUUCCG-----------CG-CGUGGUac -5'
11098 5' -59.1 NC_002794.1 + 152678 0.67 0.797232
Target:  5'- aUCGCGaGCuGggGGUGUGCGCCu-- -3'
miRNA:   3'- aGGUGCcCGuCuuCCGCGCGUGGuac -5'
11098 5' -59.1 NC_002794.1 + 138921 0.67 0.797232
Target:  5'- aCCGCGG-CGGAuggucugccGGUGCGCccccACCGUGg -3'
miRNA:   3'- aGGUGCCcGUCUu--------CCGCGCG----UGGUAC- -5'
11098 5' -59.1 NC_002794.1 + 186647 0.67 0.752016
Target:  5'- -gCGCGGGUcGGccGCGCGCACCc-- -3'
miRNA:   3'- agGUGCCCGuCUucCGCGCGUGGuac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.