miRNA display CGI


Results 41 - 60 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11098 5' -59.1 NC_002794.1 + 101587 0.67 0.788436
Target:  5'- gCCGCGGccgGGggGGCGgGUGCCGg- -3'
miRNA:   3'- aGGUGCCcg-UCuuCCGCgCGUGGUac -5'
11098 5' -59.1 NC_002794.1 + 158744 0.67 0.779509
Target:  5'- gCC-CGGGUAGu--GUGCGCGCaCGUGg -3'
miRNA:   3'- aGGuGCCCGUCuucCGCGCGUG-GUAC- -5'
11098 5' -59.1 NC_002794.1 + 94411 0.67 0.770458
Target:  5'- aCCGCGGuGU--GGGGCGCGC-CCGa- -3'
miRNA:   3'- aGGUGCC-CGucUUCCGCGCGuGGUac -5'
11098 5' -59.1 NC_002794.1 + 60584 0.68 0.733177
Target:  5'- cUCCAcgcCGGGCcugcuGGAGGCGCaGCAgCAa- -3'
miRNA:   3'- -AGGU---GCCCGu----CUUCCGCG-CGUgGUac -5'
11098 5' -59.1 NC_002794.1 + 97478 0.68 0.72363
Target:  5'- aUCCACGuGGCucuacaAGGAGaCGUGCAgCAUGa -3'
miRNA:   3'- -AGGUGC-CCG------UCUUCcGCGCGUgGUAC- -5'
11098 5' -59.1 NC_002794.1 + 8297 0.68 0.72363
Target:  5'- cUCCGacgaggaGGGC-GAAGGCG-GCACCGc- -3'
miRNA:   3'- -AGGUg------CCCGuCUUCCGCgCGUGGUac -5'
11098 5' -59.1 NC_002794.1 + 30064 0.68 0.732226
Target:  5'- cCCGCGGGgucCGGucgcccggucgacGAGGCGCGCgGCCGg- -3'
miRNA:   3'- aGGUGCCC---GUC-------------UUCCGCGCG-UGGUac -5'
11098 5' -59.1 NC_002794.1 + 101288 0.68 0.722671
Target:  5'- gCgGCGGGgAGGagacgacguaccaGGGCGC-CACCGUGu -3'
miRNA:   3'- aGgUGCCCgUCU-------------UCCGCGcGUGGUAC- -5'
11098 5' -59.1 NC_002794.1 + 33618 0.68 0.694578
Target:  5'- cUCCACGGaccuGCAGAucGUGCGgCACCGc- -3'
miRNA:   3'- -AGGUGCC----CGUCUucCGCGC-GUGGUac -5'
11098 5' -59.1 NC_002794.1 + 107175 0.68 0.733177
Target:  5'- gCUACGcGGCGGAGccGGCGC-CGCCGc- -3'
miRNA:   3'- aGGUGC-CCGUCUU--CCGCGcGUGGUac -5'
11098 5' -59.1 NC_002794.1 + 14452 0.68 0.733177
Target:  5'- cUCCGCGGGCGaccguGucGaGCgGCGCGCCGc- -3'
miRNA:   3'- -AGGUGCCCGU-----CuuC-CG-CGCGUGGUac -5'
11098 5' -59.1 NC_002794.1 + 186483 0.68 0.742642
Target:  5'- cUCCuggaGGGCccGgcGGCGCGCcuccccGCCGUGg -3'
miRNA:   3'- -AGGug--CCCGu-CuuCCGCGCG------UGGUAC- -5'
11098 5' -59.1 NC_002794.1 + 117848 0.68 0.742642
Target:  5'- -gCACGGaGCGcgacGggGGCugGCGCGCCAg- -3'
miRNA:   3'- agGUGCC-CGU----CuuCCG--CGCGUGGUac -5'
11098 5' -59.1 NC_002794.1 + 112389 0.68 0.733177
Target:  5'- -aCGCaGGGCGGcgaucuuGGCGCGCugCAg- -3'
miRNA:   3'- agGUG-CCCGUCuu-----CCGCGCGugGUac -5'
11098 5' -59.1 NC_002794.1 + 76538 0.68 0.742642
Target:  5'- gCCGCGGcGCcGAcgcGGuCGCGCGCCGg- -3'
miRNA:   3'- aGGUGCC-CGuCUu--CC-GCGCGUGGUac -5'
11098 5' -59.1 NC_002794.1 + 38480 0.68 0.742642
Target:  5'- cUUUAUGGGCGGAGGaaGCGCggcgGCGCCGg- -3'
miRNA:   3'- -AGGUGCCCGUCUUC--CGCG----CGUGGUac -5'
11098 5' -59.1 NC_002794.1 + 48573 0.68 0.742642
Target:  5'- gUCCAgaUGGGCgagccggaGGAGcGGCGCGuCGCCGUc -3'
miRNA:   3'- -AGGU--GCCCG--------UCUU-CCGCGC-GUGGUAc -5'
11098 5' -59.1 NC_002794.1 + 55796 0.69 0.673966
Target:  5'- cUCCAgcgagcgcagcgcCGGGCGc-GGGCGCGCGCUgAUGg -3'
miRNA:   3'- -AGGU-------------GCCCGUcuUCCGCGCGUGG-UAC- -5'
11098 5' -59.1 NC_002794.1 + 101007 0.69 0.674951
Target:  5'- gCCGCGGGCcuuccugucGggGGaCGCGgGCCGg- -3'
miRNA:   3'- aGGUGCCCGu--------CuuCC-GCGCgUGGUac -5'
11098 5' -59.1 NC_002794.1 + 34259 0.69 0.674951
Target:  5'- gCCGCaGGCGGAccGCGCGCaggcgGCCAg- -3'
miRNA:   3'- aGGUGcCCGUCUucCGCGCG-----UGGUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.