miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11098 5' -59.1 NC_002794.1 + 10635 0.74 0.38557
Target:  5'- gCCACGGGCGGGGagcGGCGCGaGCCc-- -3'
miRNA:   3'- aGGUGCCCGUCUU---CCGCGCgUGGuac -5'
11098 5' -59.1 NC_002794.1 + 147073 0.74 0.375173
Target:  5'- gCCGCGGGCGcccgguccaaggacGAAGGCGUcgGCGCCcgGc -3'
miRNA:   3'- aGGUGCCCGU--------------CUUCCGCG--CGUGGuaC- -5'
11098 5' -59.1 NC_002794.1 + 140905 0.74 0.38557
Target:  5'- aCCGCGuGGCGGGaccugcAGGCGCGCugCcUGc -3'
miRNA:   3'- aGGUGC-CCGUCU------UCCGCGCGugGuAC- -5'
11098 5' -59.1 NC_002794.1 + 871 0.73 0.41028
Target:  5'- cCCGCGaGGCGGucGGCGUGCGCgCGg- -3'
miRNA:   3'- aGGUGC-CCGUCuuCCGCGCGUG-GUac -5'
11098 5' -59.1 NC_002794.1 + 12408 0.73 0.42729
Target:  5'- aCCGCacGCGGAcGGCGCGCGCCGa- -3'
miRNA:   3'- aGGUGccCGUCUuCCGCGCGUGGUac -5'
11098 5' -59.1 NC_002794.1 + 179430 0.73 0.418732
Target:  5'- gCCcCGGGCGcGGAGGCGUGgACCAc- -3'
miRNA:   3'- aGGuGCCCGU-CUUCCGCGCgUGGUac -5'
11098 5' -59.1 NC_002794.1 + 99569 0.73 0.41028
Target:  5'- cUCCGCGGGCgaggggggugcGGAGGGCGCgGCGgCGg- -3'
miRNA:   3'- -AGGUGCCCG-----------UCUUCCGCG-CGUgGUac -5'
11098 5' -59.1 NC_002794.1 + 33122 0.73 0.41028
Target:  5'- gCCGCGGGCAGAcgauccaccAGGUGCuGCgggacccgACCGUGu -3'
miRNA:   3'- aGGUGCCCGUCU---------UCCGCG-CG--------UGGUAC- -5'
11098 5' -59.1 NC_002794.1 + 35037 0.72 0.480701
Target:  5'- aUCCGCGGGCugauGGAGGU-C-CACCAUGa -3'
miRNA:   3'- -AGGUGCCCGu---CUUCCGcGcGUGGUAC- -5'
11098 5' -59.1 NC_002794.1 + 114265 0.72 0.499222
Target:  5'- cUCCGgGGGCGGGucGUGCuGCACCAg- -3'
miRNA:   3'- -AGGUgCCCGUCUucCGCG-CGUGGUac -5'
11098 5' -59.1 NC_002794.1 + 58520 0.72 0.471567
Target:  5'- gUCCACGGGCAcgccGAGgccuucgccgcGGCGCGCGCg--- -3'
miRNA:   3'- -AGGUGCCCGU----CUU-----------CCGCGCGUGguac -5'
11098 5' -59.1 NC_002794.1 + 111145 0.72 0.507659
Target:  5'- cUCCACGcgguagcgggucaGGCAGAcgcggugcaGGGCGCGCACgAa- -3'
miRNA:   3'- -AGGUGC-------------CCGUCU---------UCCGCGCGUGgUac -5'
11098 5' -59.1 NC_002794.1 + 91043 0.72 0.471567
Target:  5'- cCCuCGGGguGGacgGGGCGCGCgucgucauguacGCCGUGg -3'
miRNA:   3'- aGGuGCCCguCU---UCCGCGCG------------UGGUAC- -5'
11098 5' -59.1 NC_002794.1 + 107048 0.71 0.556505
Target:  5'- cCCGCGucggaGGCGGcGGGCGCgGCGCCGc- -3'
miRNA:   3'- aGGUGC-----CCGUCuUCCGCG-CGUGGUac -5'
11098 5' -59.1 NC_002794.1 + 37136 0.71 0.566254
Target:  5'- cUCCGcCGGGUcGAGGGCGCaGCuCCAg- -3'
miRNA:   3'- -AGGU-GCCCGuCUUCCGCG-CGuGGUac -5'
11098 5' -59.1 NC_002794.1 + 183005 0.71 0.53716
Target:  5'- gCCGCGGGCGccccGCGCGCGCCc-- -3'
miRNA:   3'- aGGUGCCCGUcuucCGCGCGUGGuac -5'
11098 5' -59.1 NC_002794.1 + 18086 0.7 0.625443
Target:  5'- gUCgGUGGcGCAGAAGGCGCcCACCGc- -3'
miRNA:   3'- -AGgUGCC-CGUCUUCCGCGcGUGGUac -5'
11098 5' -59.1 NC_002794.1 + 184465 0.7 0.585875
Target:  5'- cCCGCGGGCcgcgcGAAcGGCGCGCGgggcCCcgGa -3'
miRNA:   3'- aGGUGCCCGu----CUU-CCGCGCGU----GGuaC- -5'
11098 5' -59.1 NC_002794.1 + 41864 0.7 0.595737
Target:  5'- gCCGcCGGGCAGGgccGGGCGCuGCcacGCCAc- -3'
miRNA:   3'- aGGU-GCCCGUCU---UCCGCG-CG---UGGUac -5'
11098 5' -59.1 NC_002794.1 + 73056 0.7 0.576046
Target:  5'- aUCACGcugaacuucuGGCAGGAGGacggGCGCACCGUc -3'
miRNA:   3'- aGGUGC----------CCGUCUUCCg---CGCGUGGUAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.