Results 21 - 40 of 88 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11098 | 5' | -59.1 | NC_002794.1 | + | 18086 | 0.7 | 0.625443 |
Target: 5'- gUCgGUGGcGCAGAAGGCGCcCACCGc- -3' miRNA: 3'- -AGgUGCC-CGUCUUCCGCGcGUGGUac -5' |
|||||||
11098 | 5' | -59.1 | NC_002794.1 | + | 60625 | 0.69 | 0.645284 |
Target: 5'- aCCggACGGGCGGAcccGGCGCcggcgGCGCCGg- -3' miRNA: 3'- aGG--UGCCCGUCUu--CCGCG-----CGUGGUac -5' |
|||||||
11098 | 5' | -59.1 | NC_002794.1 | + | 101007 | 0.69 | 0.674951 |
Target: 5'- gCCGCGGGCcuuccugucGggGGaCGCGgGCCGg- -3' miRNA: 3'- aGGUGCCCGu--------CuuCC-GCGCgUGGUac -5' |
|||||||
11098 | 5' | -59.1 | NC_002794.1 | + | 140035 | 0.69 | 0.644292 |
Target: 5'- cCCGCGGGCGGcgggagacacggaAAGGgGCuCACCAc- -3' miRNA: 3'- aGGUGCCCGUC-------------UUCCgCGcGUGGUac -5' |
|||||||
11098 | 5' | -59.1 | NC_002794.1 | + | 56913 | 0.69 | 0.665084 |
Target: 5'- gCCACGGGCGccGGGCugccggccuCGCACCAg- -3' miRNA: 3'- aGGUGCCCGUcuUCCGc--------GCGUGGUac -5' |
|||||||
11098 | 5' | -59.1 | NC_002794.1 | + | 55796 | 0.69 | 0.673966 |
Target: 5'- cUCCAgcgagcgcagcgcCGGGCGc-GGGCGCGCGCUgAUGg -3' miRNA: 3'- -AGGU-------------GCCCGUcuUCCGCGCGUGG-UAC- -5' |
|||||||
11098 | 5' | -59.1 | NC_002794.1 | + | 43673 | 0.69 | 0.655193 |
Target: 5'- cUCU-CGGGCcc-GGGCGCGgACCAUGc -3' miRNA: 3'- -AGGuGCCCGucuUCCGCGCgUGGUAC- -5' |
|||||||
11098 | 5' | -59.1 | NC_002794.1 | + | 143532 | 0.69 | 0.644292 |
Target: 5'- cCCGCGucCAGGAGGCGCggcacgaGCACgGUGg -3' miRNA: 3'- aGGUGCccGUCUUCCGCG-------CGUGgUAC- -5' |
|||||||
11098 | 5' | -59.1 | NC_002794.1 | + | 107091 | 0.69 | 0.665084 |
Target: 5'- gCCgACGGGCGGggGuGUGuCGCugCGa- -3' miRNA: 3'- aGG-UGCCCGUCuuC-CGC-GCGugGUac -5' |
|||||||
11098 | 5' | -59.1 | NC_002794.1 | + | 137069 | 0.69 | 0.684785 |
Target: 5'- gUCgGCGGGCucuu--CGCGCGCCAUGu -3' miRNA: 3'- -AGgUGCCCGucuuccGCGCGUGGUAC- -5' |
|||||||
11098 | 5' | -59.1 | NC_002794.1 | + | 34259 | 0.69 | 0.674951 |
Target: 5'- gCCGCaGGCGGAccGCGCGCaggcgGCCAg- -3' miRNA: 3'- aGGUGcCCGUCUucCGCGCG-----UGGUac -5' |
|||||||
11098 | 5' | -59.1 | NC_002794.1 | + | 60584 | 0.68 | 0.733177 |
Target: 5'- cUCCAcgcCGGGCcugcuGGAGGCGCaGCAgCAa- -3' miRNA: 3'- -AGGU---GCCCGu----CUUCCGCG-CGUgGUac -5' |
|||||||
11098 | 5' | -59.1 | NC_002794.1 | + | 8297 | 0.68 | 0.72363 |
Target: 5'- cUCCGacgaggaGGGC-GAAGGCG-GCACCGc- -3' miRNA: 3'- -AGGUg------CCCGuCUUCCGCgCGUGGUac -5' |
|||||||
11098 | 5' | -59.1 | NC_002794.1 | + | 107175 | 0.68 | 0.733177 |
Target: 5'- gCUACGcGGCGGAGccGGCGC-CGCCGc- -3' miRNA: 3'- aGGUGC-CCGUCUU--CCGCGcGUGGUac -5' |
|||||||
11098 | 5' | -59.1 | NC_002794.1 | + | 101288 | 0.68 | 0.722671 |
Target: 5'- gCgGCGGGgAGGagacgacguaccaGGGCGC-CACCGUGu -3' miRNA: 3'- aGgUGCCCgUCU-------------UCCGCGcGUGGUAC- -5' |
|||||||
11098 | 5' | -59.1 | NC_002794.1 | + | 76538 | 0.68 | 0.742642 |
Target: 5'- gCCGCGGcGCcGAcgcGGuCGCGCGCCGg- -3' miRNA: 3'- aGGUGCC-CGuCUu--CC-GCGCGUGGUac -5' |
|||||||
11098 | 5' | -59.1 | NC_002794.1 | + | 48573 | 0.68 | 0.742642 |
Target: 5'- gUCCAgaUGGGCgagccggaGGAGcGGCGCGuCGCCGUc -3' miRNA: 3'- -AGGU--GCCCG--------UCUU-CCGCGC-GUGGUAc -5' |
|||||||
11098 | 5' | -59.1 | NC_002794.1 | + | 14452 | 0.68 | 0.733177 |
Target: 5'- cUCCGCGGGCGaccguGucGaGCgGCGCGCCGc- -3' miRNA: 3'- -AGGUGCCCGU-----CuuC-CG-CGCGUGGUac -5' |
|||||||
11098 | 5' | -59.1 | NC_002794.1 | + | 97478 | 0.68 | 0.72363 |
Target: 5'- aUCCACGuGGCucuacaAGGAGaCGUGCAgCAUGa -3' miRNA: 3'- -AGGUGC-CCG------UCUUCcGCGCGUgGUAC- -5' |
|||||||
11098 | 5' | -59.1 | NC_002794.1 | + | 112389 | 0.68 | 0.733177 |
Target: 5'- -aCGCaGGGCGGcgaucuuGGCGCGCugCAg- -3' miRNA: 3'- agGUG-CCCGUCuu-----CCGCGCGugGUac -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home