miRNA display CGI


Results 41 - 60 of 88 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11098 5' -59.1 NC_002794.1 + 101288 0.68 0.722671
Target:  5'- gCgGCGGGgAGGagacgacguaccaGGGCGC-CACCGUGu -3'
miRNA:   3'- aGgUGCCCgUCU-------------UCCGCGcGUGGUAC- -5'
11098 5' -59.1 NC_002794.1 + 30064 0.68 0.732226
Target:  5'- cCCGCGGGgucCGGucgcccggucgacGAGGCGCGCgGCCGg- -3'
miRNA:   3'- aGGUGCCC---GUC-------------UUCCGCGCG-UGGUac -5'
11098 5' -59.1 NC_002794.1 + 117848 0.68 0.742642
Target:  5'- -gCACGGaGCGcgacGggGGCugGCGCGCCAg- -3'
miRNA:   3'- agGUGCC-CGU----CuuCCG--CGCGUGGUac -5'
11098 5' -59.1 NC_002794.1 + 186483 0.68 0.742642
Target:  5'- cUCCuggaGGGCccGgcGGCGCGCcuccccGCCGUGg -3'
miRNA:   3'- -AGGug--CCCGu-CuuCCGCGCG------UGGUAC- -5'
11098 5' -59.1 NC_002794.1 + 8297 0.68 0.72363
Target:  5'- cUCCGacgaggaGGGC-GAAGGCG-GCACCGc- -3'
miRNA:   3'- -AGGUg------CCCGuCUUCCGCgCGUGGUac -5'
11098 5' -59.1 NC_002794.1 + 138921 0.67 0.797232
Target:  5'- aCCGCGG-CGGAuggucugccGGUGCGCccccACCGUGg -3'
miRNA:   3'- aGGUGCCcGUCUu--------CCGCGCG----UGGUAC- -5'
11098 5' -59.1 NC_002794.1 + 152678 0.67 0.797232
Target:  5'- aUCGCGaGCuGggGGUGUGCGCCu-- -3'
miRNA:   3'- aGGUGCcCGuCuuCCGCGCGUGGuac -5'
11098 5' -59.1 NC_002794.1 + 118248 0.67 0.797232
Target:  5'- gUCgGCGGGCuGGAGGUcggccggggcgGCgGCGCCGg- -3'
miRNA:   3'- -AGgUGCCCGuCUUCCG-----------CG-CGUGGUac -5'
11098 5' -59.1 NC_002794.1 + 122970 0.67 0.789322
Target:  5'- gCCugGGGUGGcuguacgcgcgccuGGUGCGgGCCGUGc -3'
miRNA:   3'- aGGugCCCGUCuu------------CCGCGCgUGGUAC- -5'
11098 5' -59.1 NC_002794.1 + 141424 0.67 0.788436
Target:  5'- cUCGgGGGCGGcgGGGGCGCcggggGCGCCGg- -3'
miRNA:   3'- aGGUgCCCGUC--UUCCGCG-----CGUGGUac -5'
11098 5' -59.1 NC_002794.1 + 101587 0.67 0.788436
Target:  5'- gCCGCGGccgGGggGGCGgGUGCCGg- -3'
miRNA:   3'- aGGUGCCcg-UCuuCCGCgCGUGGUac -5'
11098 5' -59.1 NC_002794.1 + 158744 0.67 0.779509
Target:  5'- gCC-CGGGUAGu--GUGCGCGCaCGUGg -3'
miRNA:   3'- aGGuGCCCGUCuucCGCGCGUG-GUAC- -5'
11098 5' -59.1 NC_002794.1 + 89496 0.67 0.752016
Target:  5'- cUCCcgcgauGCGGGCAGGAGacCGCGUagGCCAg- -3'
miRNA:   3'- -AGG------UGCCCGUCUUCc-GCGCG--UGGUac -5'
11098 5' -59.1 NC_002794.1 + 191487 0.67 0.760368
Target:  5'- gCCACGGGCGaucguccgccaccGAgAGGUGCcaGCGCCGg- -3'
miRNA:   3'- aGGUGCCCGU-------------CU-UCCGCG--CGUGGUac -5'
11098 5' -59.1 NC_002794.1 + 80276 0.67 0.761291
Target:  5'- cUCaCACGGGUcaacgagcucguGGAGGGCGUcuucaGCcCCGUGg -3'
miRNA:   3'- -AG-GUGCCCG------------UCUUCCGCG-----CGuGGUAC- -5'
11098 5' -59.1 NC_002794.1 + 68940 0.67 0.761291
Target:  5'- cCCGCGGGCcgc-GGCGCcgGCGCCu-- -3'
miRNA:   3'- aGGUGCCCGucuuCCGCG--CGUGGuac -5'
11098 5' -59.1 NC_002794.1 + 103409 0.67 0.752016
Target:  5'- aCCAcguCGGGCAGcgccGCGUGCACgAUGu -3'
miRNA:   3'- aGGU---GCCCGUCuuc-CGCGCGUGgUAC- -5'
11098 5' -59.1 NC_002794.1 + 32059 0.67 0.751083
Target:  5'- cUCCACGGcguuguaaaaguaGUAGAAgaacacgacGGCGUGCAgCAUGu -3'
miRNA:   3'- -AGGUGCC-------------CGUCUU---------CCGCGCGUgGUAC- -5'
11098 5' -59.1 NC_002794.1 + 186647 0.67 0.752016
Target:  5'- -gCGCGGGUcGGccGCGCGCACCc-- -3'
miRNA:   3'- agGUGCCCGuCUucCGCGCGUGGuac -5'
11098 5' -59.1 NC_002794.1 + 142396 0.67 0.752016
Target:  5'- aCgGCGGuGCAGgcGGCGUcggcgGCGCCGg- -3'
miRNA:   3'- aGgUGCC-CGUCuuCCGCG-----CGUGGUac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.