miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11098 5' -59.1 NC_002794.1 + 18086 0.7 0.625443
Target:  5'- gUCgGUGGcGCAGAAGGCGCcCACCGc- -3'
miRNA:   3'- -AGgUGCC-CGUCUUCCGCGcGUGGUac -5'
11098 5' -59.1 NC_002794.1 + 143532 0.69 0.644292
Target:  5'- cCCGCGucCAGGAGGCGCggcacgaGCACgGUGg -3'
miRNA:   3'- aGGUGCccGUCUUCCGCG-------CGUGgUAC- -5'
11098 5' -59.1 NC_002794.1 + 140035 0.69 0.644292
Target:  5'- cCCGCGGGCGGcgggagacacggaAAGGgGCuCACCAc- -3'
miRNA:   3'- aGGUGCCCGUC-------------UUCCgCGcGUGGUac -5'
11098 5' -59.1 NC_002794.1 + 60625 0.69 0.645284
Target:  5'- aCCggACGGGCGGAcccGGCGCcggcgGCGCCGg- -3'
miRNA:   3'- aGG--UGCCCGUCUu--CCGCG-----CGUGGUac -5'
11098 5' -59.1 NC_002794.1 + 43673 0.69 0.655193
Target:  5'- cUCU-CGGGCcc-GGGCGCGgACCAUGc -3'
miRNA:   3'- -AGGuGCCCGucuUCCGCGCgUGGUAC- -5'
11098 5' -59.1 NC_002794.1 + 56913 0.69 0.665084
Target:  5'- gCCACGGGCGccGGGCugccggccuCGCACCAg- -3'
miRNA:   3'- aGGUGCCCGUcuUCCGc--------GCGUGGUac -5'
11098 5' -59.1 NC_002794.1 + 107091 0.69 0.665084
Target:  5'- gCCgACGGGCGGggGuGUGuCGCugCGa- -3'
miRNA:   3'- aGG-UGCCCGUCuuC-CGC-GCGugGUac -5'
11098 5' -59.1 NC_002794.1 + 55796 0.69 0.673966
Target:  5'- cUCCAgcgagcgcagcgcCGGGCGc-GGGCGCGCGCUgAUGg -3'
miRNA:   3'- -AGGU-------------GCCCGUcuUCCGCGCGUGG-UAC- -5'
11098 5' -59.1 NC_002794.1 + 34259 0.69 0.674951
Target:  5'- gCCGCaGGCGGAccGCGCGCaggcgGCCAg- -3'
miRNA:   3'- aGGUGcCCGUCUucCGCGCG-----UGGUac -5'
11098 5' -59.1 NC_002794.1 + 101007 0.69 0.674951
Target:  5'- gCCGCGGGCcuuccugucGggGGaCGCGgGCCGg- -3'
miRNA:   3'- aGGUGCCCGu--------CuuCC-GCGCgUGGUac -5'
11098 5' -59.1 NC_002794.1 + 137069 0.69 0.684785
Target:  5'- gUCgGCGGGCucuu--CGCGCGCCAUGu -3'
miRNA:   3'- -AGgUGCCCGucuuccGCGCGUGGUAC- -5'
11098 5' -59.1 NC_002794.1 + 33618 0.68 0.694578
Target:  5'- cUCCACGGaccuGCAGAucGUGCGgCACCGc- -3'
miRNA:   3'- -AGGUGCC----CGUCUucCGCGC-GUGGUac -5'
11098 5' -59.1 NC_002794.1 + 101288 0.68 0.722671
Target:  5'- gCgGCGGGgAGGagacgacguaccaGGGCGC-CACCGUGu -3'
miRNA:   3'- aGgUGCCCgUCU-------------UCCGCGcGUGGUAC- -5'
11098 5' -59.1 NC_002794.1 + 8297 0.68 0.72363
Target:  5'- cUCCGacgaggaGGGC-GAAGGCG-GCACCGc- -3'
miRNA:   3'- -AGGUg------CCCGuCUUCCGCgCGUGGUac -5'
11098 5' -59.1 NC_002794.1 + 97478 0.68 0.72363
Target:  5'- aUCCACGuGGCucuacaAGGAGaCGUGCAgCAUGa -3'
miRNA:   3'- -AGGUGC-CCG------UCUUCcGCGCGUgGUAC- -5'
11098 5' -59.1 NC_002794.1 + 30064 0.68 0.732226
Target:  5'- cCCGCGGGgucCGGucgcccggucgacGAGGCGCGCgGCCGg- -3'
miRNA:   3'- aGGUGCCC---GUC-------------UUCCGCGCG-UGGUac -5'
11098 5' -59.1 NC_002794.1 + 112389 0.68 0.733177
Target:  5'- -aCGCaGGGCGGcgaucuuGGCGCGCugCAg- -3'
miRNA:   3'- agGUG-CCCGUCuu-----CCGCGCGugGUac -5'
11098 5' -59.1 NC_002794.1 + 107175 0.68 0.733177
Target:  5'- gCUACGcGGCGGAGccGGCGC-CGCCGc- -3'
miRNA:   3'- aGGUGC-CCGUCUU--CCGCGcGUGGUac -5'
11098 5' -59.1 NC_002794.1 + 60584 0.68 0.733177
Target:  5'- cUCCAcgcCGGGCcugcuGGAGGCGCaGCAgCAa- -3'
miRNA:   3'- -AGGU---GCCCGu----CUUCCGCG-CGUgGUac -5'
11098 5' -59.1 NC_002794.1 + 14452 0.68 0.733177
Target:  5'- cUCCGCGGGCGaccguGucGaGCgGCGCGCCGc- -3'
miRNA:   3'- -AGGUGCCCGU-----CuuC-CG-CGCGUGGUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.