Results 41 - 60 of 88 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
11098 | 5' | -59.1 | NC_002794.1 | + | 38480 | 0.68 | 0.742642 |
Target: 5'- cUUUAUGGGCGGAGGaaGCGCggcgGCGCCGg- -3' miRNA: 3'- -AGGUGCCCGUCUUC--CGCG----CGUGGUac -5' |
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11098 | 5' | -59.1 | NC_002794.1 | + | 48573 | 0.68 | 0.742642 |
Target: 5'- gUCCAgaUGGGCgagccggaGGAGcGGCGCGuCGCCGUc -3' miRNA: 3'- -AGGU--GCCCG--------UCUU-CCGCGC-GUGGUAc -5' |
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11098 | 5' | -59.1 | NC_002794.1 | + | 76538 | 0.68 | 0.742642 |
Target: 5'- gCCGCGGcGCcGAcgcGGuCGCGCGCCGg- -3' miRNA: 3'- aGGUGCC-CGuCUu--CC-GCGCGUGGUac -5' |
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11098 | 5' | -59.1 | NC_002794.1 | + | 117848 | 0.68 | 0.742642 |
Target: 5'- -gCACGGaGCGcgacGggGGCugGCGCGCCAg- -3' miRNA: 3'- agGUGCC-CGU----CuuCCG--CGCGUGGUac -5' |
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11098 | 5' | -59.1 | NC_002794.1 | + | 186483 | 0.68 | 0.742642 |
Target: 5'- cUCCuggaGGGCccGgcGGCGCGCcuccccGCCGUGg -3' miRNA: 3'- -AGGug--CCCGu-CuuCCGCGCG------UGGUAC- -5' |
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11098 | 5' | -59.1 | NC_002794.1 | + | 32059 | 0.67 | 0.751083 |
Target: 5'- cUCCACGGcguuguaaaaguaGUAGAAgaacacgacGGCGUGCAgCAUGu -3' miRNA: 3'- -AGGUGCC-------------CGUCUU---------CCGCGCGUgGUAC- -5' |
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11098 | 5' | -59.1 | NC_002794.1 | + | 142396 | 0.67 | 0.752016 |
Target: 5'- aCgGCGGuGCAGgcGGCGUcggcgGCGCCGg- -3' miRNA: 3'- aGgUGCC-CGUCuuCCGCG-----CGUGGUac -5' |
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11098 | 5' | -59.1 | NC_002794.1 | + | 186647 | 0.67 | 0.752016 |
Target: 5'- -gCGCGGGUcGGccGCGCGCACCc-- -3' miRNA: 3'- agGUGCCCGuCUucCGCGCGUGGuac -5' |
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11098 | 5' | -59.1 | NC_002794.1 | + | 89496 | 0.67 | 0.752016 |
Target: 5'- cUCCcgcgauGCGGGCAGGAGacCGCGUagGCCAg- -3' miRNA: 3'- -AGG------UGCCCGUCUUCc-GCGCG--UGGUac -5' |
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11098 | 5' | -59.1 | NC_002794.1 | + | 103409 | 0.67 | 0.752016 |
Target: 5'- aCCAcguCGGGCAGcgccGCGUGCACgAUGu -3' miRNA: 3'- aGGU---GCCCGUCuuc-CGCGCGUGgUAC- -5' |
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11098 | 5' | -59.1 | NC_002794.1 | + | 191487 | 0.67 | 0.760368 |
Target: 5'- gCCACGGGCGaucguccgccaccGAgAGGUGCcaGCGCCGg- -3' miRNA: 3'- aGGUGCCCGU-------------CU-UCCGCG--CGUGGUac -5' |
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11098 | 5' | -59.1 | NC_002794.1 | + | 80276 | 0.67 | 0.761291 |
Target: 5'- cUCaCACGGGUcaacgagcucguGGAGGGCGUcuucaGCcCCGUGg -3' miRNA: 3'- -AG-GUGCCCG------------UCUUCCGCG-----CGuGGUAC- -5' |
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11098 | 5' | -59.1 | NC_002794.1 | + | 68940 | 0.67 | 0.761291 |
Target: 5'- cCCGCGGGCcgc-GGCGCcgGCGCCu-- -3' miRNA: 3'- aGGUGCCCGucuuCCGCG--CGUGGuac -5' |
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11098 | 5' | -59.1 | NC_002794.1 | + | 94411 | 0.67 | 0.770458 |
Target: 5'- aCCGCGGuGU--GGGGCGCGC-CCGa- -3' miRNA: 3'- aGGUGCC-CGucUUCCGCGCGuGGUac -5' |
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11098 | 5' | -59.1 | NC_002794.1 | + | 115049 | 0.67 | 0.770458 |
Target: 5'- -aC-CGGGCGGcGGGCGgcaGCGCCGUc -3' miRNA: 3'- agGuGCCCGUCuUCCGCg--CGUGGUAc -5' |
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11098 | 5' | -59.1 | NC_002794.1 | + | 56383 | 0.67 | 0.770458 |
Target: 5'- aUCCACcGGCAcGGauugcgagAGGCGCGCAUCc-- -3' miRNA: 3'- -AGGUGcCCGU-CU--------UCCGCGCGUGGuac -5' |
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11098 | 5' | -59.1 | NC_002794.1 | + | 158744 | 0.67 | 0.779509 |
Target: 5'- gCC-CGGGUAGu--GUGCGCGCaCGUGg -3' miRNA: 3'- aGGuGCCCGUCuucCGCGCGUG-GUAC- -5' |
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11098 | 5' | -59.1 | NC_002794.1 | + | 186760 | 0.67 | 0.779509 |
Target: 5'- aCCAgGGGCAGGccAGGCGCuccgacacguaGCGCgCGa- -3' miRNA: 3'- aGGUgCCCGUCU--UCCGCG-----------CGUG-GUac -5' |
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11098 | 5' | -59.1 | NC_002794.1 | + | 101587 | 0.67 | 0.788436 |
Target: 5'- gCCGCGGccgGGggGGCGgGUGCCGg- -3' miRNA: 3'- aGGUGCCcg-UCuuCCGCgCGUGGUac -5' |
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11098 | 5' | -59.1 | NC_002794.1 | + | 141424 | 0.67 | 0.788436 |
Target: 5'- cUCGgGGGCGGcgGGGGCGCcggggGCGCCGg- -3' miRNA: 3'- aGGUgCCCGUC--UUCCGCG-----CGUGGUac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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