miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11098 5' -59.1 NC_002794.1 + 871 0.73 0.41028
Target:  5'- cCCGCGaGGCGGucGGCGUGCGCgCGg- -3'
miRNA:   3'- aGGUGC-CCGUCuuCCGCGCGUG-GUac -5'
11098 5' -59.1 NC_002794.1 + 1086 0.66 0.830933
Target:  5'- uUUCG-GGGCguccugAGGAGGCGUGCccauCCGUGg -3'
miRNA:   3'- -AGGUgCCCG------UCUUCCGCGCGu---GGUAC- -5'
11098 5' -59.1 NC_002794.1 + 8297 0.68 0.72363
Target:  5'- cUCCGacgaggaGGGC-GAAGGCG-GCACCGc- -3'
miRNA:   3'- -AGGUg------CCCGuCUUCCGCgCGUGGUac -5'
11098 5' -59.1 NC_002794.1 + 8631 0.66 0.838952
Target:  5'- --aGCGcGGUGGAAGacGUGCGCGCCAa- -3'
miRNA:   3'- aggUGC-CCGUCUUC--CGCGCGUGGUac -5'
11098 5' -59.1 NC_002794.1 + 10635 0.74 0.38557
Target:  5'- gCCACGGGCGGGGagcGGCGCGaGCCc-- -3'
miRNA:   3'- aGGUGCCCGUCUU---CCGCGCgUGGuac -5'
11098 5' -59.1 NC_002794.1 + 12408 0.73 0.42729
Target:  5'- aCCGCacGCGGAcGGCGCGCGCCGa- -3'
miRNA:   3'- aGGUGccCGUCUuCCGCGCGUGGUac -5'
11098 5' -59.1 NC_002794.1 + 14452 0.68 0.733177
Target:  5'- cUCCGCGGGCGaccguGucGaGCgGCGCGCCGc- -3'
miRNA:   3'- -AGGUGCCCGU-----CuuC-CG-CGCGUGGUac -5'
11098 5' -59.1 NC_002794.1 + 18086 0.7 0.625443
Target:  5'- gUCgGUGGcGCAGAAGGCGCcCACCGc- -3'
miRNA:   3'- -AGgUGCC-CGUCUUCCGCGcGUGGUac -5'
11098 5' -59.1 NC_002794.1 + 26666 0.66 0.838952
Target:  5'- gUCgGCGGGguGGA-GCGC-CACCGa- -3'
miRNA:   3'- -AGgUGCCCguCUUcCGCGcGUGGUac -5'
11098 5' -59.1 NC_002794.1 + 30064 0.68 0.732226
Target:  5'- cCCGCGGGgucCGGucgcccggucgacGAGGCGCGCgGCCGg- -3'
miRNA:   3'- aGGUGCCC---GUC-------------UUCCGCGCG-UGGUac -5'
11098 5' -59.1 NC_002794.1 + 32059 0.67 0.751083
Target:  5'- cUCCACGGcguuguaaaaguaGUAGAAgaacacgacGGCGUGCAgCAUGu -3'
miRNA:   3'- -AGGUGCC-------------CGUCUU---------CCGCGCGUgGUAC- -5'
11098 5' -59.1 NC_002794.1 + 32870 0.66 0.822744
Target:  5'- cCgGCGGGCGGcggcggcggcGGCG-GCAUCAUGg -3'
miRNA:   3'- aGgUGCCCGUCuu--------CCGCgCGUGGUAC- -5'
11098 5' -59.1 NC_002794.1 + 33122 0.73 0.41028
Target:  5'- gCCGCGGGCAGAcgauccaccAGGUGCuGCgggacccgACCGUGu -3'
miRNA:   3'- aGGUGCCCGUCU---------UCCGCG-CG--------UGGUAC- -5'
11098 5' -59.1 NC_002794.1 + 33618 0.68 0.694578
Target:  5'- cUCCACGGaccuGCAGAucGUGCGgCACCGc- -3'
miRNA:   3'- -AGGUGCC----CGUCUucCGCGC-GUGGUac -5'
11098 5' -59.1 NC_002794.1 + 34259 0.69 0.674951
Target:  5'- gCCGCaGGCGGAccGCGCGCaggcgGCCAg- -3'
miRNA:   3'- aGGUGcCCGUCUucCGCGCG-----UGGUac -5'
11098 5' -59.1 NC_002794.1 + 35037 0.72 0.480701
Target:  5'- aUCCGCGGGCugauGGAGGU-C-CACCAUGa -3'
miRNA:   3'- -AGGUGCCCGu---CUUCCGcGcGUGGUAC- -5'
11098 5' -59.1 NC_002794.1 + 37136 0.71 0.566254
Target:  5'- cUCCGcCGGGUcGAGGGCGCaGCuCCAg- -3'
miRNA:   3'- -AGGU-GCCCGuCUUCCGCG-CGuGGUac -5'
11098 5' -59.1 NC_002794.1 + 38480 0.68 0.742642
Target:  5'- cUUUAUGGGCGGAGGaaGCGCggcgGCGCCGg- -3'
miRNA:   3'- -AGGUGCCCGUCUUC--CGCG----CGUGGUac -5'
11098 5' -59.1 NC_002794.1 + 41864 0.7 0.595737
Target:  5'- gCCGcCGGGCAGGgccGGGCGCuGCcacGCCAc- -3'
miRNA:   3'- aGGU-GCCCGUCU---UCCGCG-CG---UGGUac -5'
11098 5' -59.1 NC_002794.1 + 42582 0.66 0.830933
Target:  5'- cCCGCGGacggaGGAGGGCGCgGCgGCCGg- -3'
miRNA:   3'- aGGUGCCcg---UCUUCCGCG-CG-UGGUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.