miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11098 5' -59.1 NC_002794.1 + 43673 0.69 0.655193
Target:  5'- cUCU-CGGGCcc-GGGCGCGgACCAUGc -3'
miRNA:   3'- -AGGuGCCCGucuUCCGCGCgUGGUAC- -5'
11098 5' -59.1 NC_002794.1 + 48573 0.68 0.742642
Target:  5'- gUCCAgaUGGGCgagccggaGGAGcGGCGCGuCGCCGUc -3'
miRNA:   3'- -AGGU--GCCCG--------UCUU-CCGCGC-GUGGUAc -5'
11098 5' -59.1 NC_002794.1 + 52165 0.66 0.838952
Target:  5'- aCCAgGcGGCGGc-GGUGCGCAUCGc- -3'
miRNA:   3'- aGGUgC-CCGUCuuCCGCGCGUGGUac -5'
11098 5' -59.1 NC_002794.1 + 55796 0.69 0.673966
Target:  5'- cUCCAgcgagcgcagcgcCGGGCGc-GGGCGCGCGCUgAUGg -3'
miRNA:   3'- -AGGU-------------GCCCGUcuUCCGCGCGUGG-UAC- -5'
11098 5' -59.1 NC_002794.1 + 56383 0.67 0.770458
Target:  5'- aUCCACcGGCAcGGauugcgagAGGCGCGCAUCc-- -3'
miRNA:   3'- -AGGUGcCCGU-CU--------UCCGCGCGUGGuac -5'
11098 5' -59.1 NC_002794.1 + 56913 0.69 0.665084
Target:  5'- gCCACGGGCGccGGGCugccggccuCGCACCAg- -3'
miRNA:   3'- aGGUGCCCGUcuUCCGc--------GCGUGGUac -5'
11098 5' -59.1 NC_002794.1 + 58520 0.72 0.471567
Target:  5'- gUCCACGGGCAcgccGAGgccuucgccgcGGCGCGCGCg--- -3'
miRNA:   3'- -AGGUGCCCGU----CUU-----------CCGCGCGUGguac -5'
11098 5' -59.1 NC_002794.1 + 60584 0.68 0.733177
Target:  5'- cUCCAcgcCGGGCcugcuGGAGGCGCaGCAgCAa- -3'
miRNA:   3'- -AGGU---GCCCGu----CUUCCGCG-CGUgGUac -5'
11098 5' -59.1 NC_002794.1 + 60625 0.69 0.645284
Target:  5'- aCCggACGGGCGGAcccGGCGCcggcgGCGCCGg- -3'
miRNA:   3'- aGG--UGCCCGUCUu--CCGCG-----CGUGGUac -5'
11098 5' -59.1 NC_002794.1 + 62501 0.66 0.838952
Target:  5'- aCgGCGGGCGGcgccgccGGCGCcuccgccCACCGUGa -3'
miRNA:   3'- aGgUGCCCGUCuu-----CCGCGc------GUGGUAC- -5'
11098 5' -59.1 NC_002794.1 + 65228 0.66 0.805886
Target:  5'- uUCCACGGGCGGc-GGuCGcCGCGgCGg- -3'
miRNA:   3'- -AGGUGCCCGUCuuCC-GC-GCGUgGUac -5'
11098 5' -59.1 NC_002794.1 + 68940 0.67 0.761291
Target:  5'- cCCGCGGGCcgc-GGCGCcgGCGCCu-- -3'
miRNA:   3'- aGGUGCCCGucuuCCGCG--CGUGGuac -5'
11098 5' -59.1 NC_002794.1 + 71229 0.66 0.805886
Target:  5'- gCCGCGuaguGGCGGccGGCGUGgACCGg- -3'
miRNA:   3'- aGGUGC----CCGUCuuCCGCGCgUGGUac -5'
11098 5' -59.1 NC_002794.1 + 73056 0.7 0.576046
Target:  5'- aUCACGcugaacuucuGGCAGGAGGacggGCGCACCGUc -3'
miRNA:   3'- aGGUGC----------CCGUCUUCCg---CGCGUGGUAc -5'
11098 5' -59.1 NC_002794.1 + 76538 0.68 0.742642
Target:  5'- gCCGCGGcGCcGAcgcGGuCGCGCGCCGg- -3'
miRNA:   3'- aGGUGCC-CGuCUu--CC-GCGCGUGGUac -5'
11098 5' -59.1 NC_002794.1 + 80276 0.67 0.761291
Target:  5'- cUCaCACGGGUcaacgagcucguGGAGGGCGUcuucaGCcCCGUGg -3'
miRNA:   3'- -AG-GUGCCCG------------UCUUCCGCG-----CGuGGUAC- -5'
11098 5' -59.1 NC_002794.1 + 81232 0.66 0.814393
Target:  5'- cCCcCGGGCcGc--GCGCGCACCAc- -3'
miRNA:   3'- aGGuGCCCGuCuucCGCGCGUGGUac -5'
11098 5' -59.1 NC_002794.1 + 89496 0.67 0.752016
Target:  5'- cUCCcgcgauGCGGGCAGGAGacCGCGUagGCCAg- -3'
miRNA:   3'- -AGG------UGCCCGUCUUCc-GCGCG--UGGUac -5'
11098 5' -59.1 NC_002794.1 + 91043 0.72 0.471567
Target:  5'- cCCuCGGGguGGacgGGGCGCGCgucgucauguacGCCGUGg -3'
miRNA:   3'- aGGuGCCCguCU---UCCGCGCG------------UGGUAC- -5'
11098 5' -59.1 NC_002794.1 + 91128 0.66 0.84211
Target:  5'- gCCguGCGuGG-AGGAGGCGCggacggugcugcuggGCGCCGUGg -3'
miRNA:   3'- aGG--UGC-CCgUCUUCCGCG---------------CGUGGUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.